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cleanup PR for Neuroblox 0.3#324

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helmutstrey merged 24 commits intomasterNeuroblox/Neuroblox.jl:masterfrom cleanup04Neuroblox/Neuroblox.jl:cleanup04Copy head branch name to clipboardJan 25, 2024

Commits

Commits on Jan 12, 2024

• removed commented out sections in GUI.jl and made ObserverBlox not show up in GUI

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Commits on Jan 15, 2024

• Remove old component tests

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  agchesebro

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• Update LinearNeuralMass

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• Update LinearNeuralMass

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• Update HarmonicOscillator

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• Update Jansen Rit

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• Try fixing escape sequence for LaTeX

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• Ok now I've really fixed the docstring issue

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Commits on Jan 16, 2024

• Removed failing tests

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• Final tidying of neural mass blocks (for now)

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• Removed additional failing tests

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Commits on Jan 17, 2024

• David code cleanup. Note that I collapsed compileparameterlist and progress_scope into paramscoping. This works fine for the current code but it will not work if models have many layers of hierarch…

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  david-hofmann

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• Clean up exports

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  agchesebro

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Commits on Jan 19, 2024

• removed libraries from spectralDCM.jl, removed aliases for libraries

  david-hofmann

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Commits on Jan 23, 2024

• Additional cleanup

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• Final tidying

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Commits on Jan 24, 2024

• added blox connectors for CMC and SPM12 based Jansen-Rit. TODO: find a generic solution rather than having a special JR block to deal with the sigmoidal connection function

  david-hofmann

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• added get functions for weight matrices as well as for parts of composite bloxs

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• new canonical micro circuit based on system from graph code-base rather than ODEfromGraph

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• mini edit

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• Merge branch 'cleanup04' of https://github.com/Neuroblox/Neuroblox.jl into cleanup04

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• minor cleanup of Neuroblox.jl

  david-hofmann

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• remove ODEfromGraph code-base and related functions in Neurographs.jl

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• Merge branch 'master' into cleanup04

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