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Reorganize root directory#646

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ehennestad wants to merge 32 commits intomasterNeurodataWithoutBorders/matnwb:masterfrom reorganize-root-directoryNeurodataWithoutBorders/matnwb:reorganize-root-directoryCopy head branch name to clipboard

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Commits on Dec 6, 2024

• Update main function docstrings to work better with sphinx/rst formatting

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• Add tools for creating rst pages for functions, classes and tutorials

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• Add docs source

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• Add .readthedocs.yaml

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• Delete previous doc files

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• Update export location for tutorial html files

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• remove html files from tutorials/html

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• Fix indentation in function docstrings

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• Add proper titles and "open in MATLAB Online" badges to tutorial pages

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• Update main page and add installation instructions

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• Add view full page badge for tutorials

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Commits on Dec 7, 2024

• Add hdmf_common types plus smaller changes

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Commits on Dec 8, 2024

• Delete docstring_processors.cpython-311.pyc

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• Update neurdata class rst template

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• Update docstring_processors.py

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• Update generator to add more information in class docstrings

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• Rerun generateCore (update all classes)

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• Update link target attributes in livescript htmls

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• Fix previous commit - use correct target attribute value

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• Update links for types to point to readthedocs

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• Update livescript html files

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Commits on Dec 9, 2024

• Add favicon, dynamic iframe height, youtube badge for tutorial

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• Update .codespellrc

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• Fix links in tutorials, add hdmf_experimental types

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• Fix wrong/outdated links in livescript tutorials tutorials

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• Update tutorial_config.json

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• Merge branch 'update-documentation-to-sphinx' of https://github.com/NeurodataWithoutBorders/matnwb into update-documentation-to-sphinx

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• Update pages

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• Minor fixes

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• Merge branch 'master' into update-documentation-to-sphinx

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• Move tests into tools folder

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• Move all code into code folder

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