update ref genome data #30

	name: update ref genome data

	on:
	# Allows you to run this workflow manually from the Actions tab
	workflow_dispatch:
	# Allows you to run this workflow every Tuesday and Friday at 12:12 UTC
	schedule:
	- cron: '12 12 * * 2,5'

	# Sets the GITHUB_TOKEN permissions to allow deployment to GitHub Pages
	permissions:
	contents: write
	pages: write
	id-token: write

	# Allow one concurrent deployment
	concurrency:
	group: 'update-data'
	cancel-in-progress: true

	jobs:
	deploy:
	timeout-minutes: 60
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-node@v3
	with:
	node-version: 18
	- name: Install dependencies
	run: npm ci
	- name: Build offline mode
	env:
	VITE_OFFLINE_VERSION: true
	run: npm run build
	- name: Push updated ref genome data and offline mode to master
	run: \|
	zip -9 -r viralwasm-consensus-offline.zip dist/ run_website.py
	git config --global user.name 'GitHub Actions'
	git config --global user.email '[email protected]'
	git add .

	# Check for changes
	if git diff-index --quiet HEAD --; then
	# No changes
	echo "No changes to commit"
	else
	# Changes detected
	git commit -m "Add updated ref genome data and offline mode zip"
	git push origin master
	fi
	- name: Build for github pages
	run: npm run build
	- name: Setup Pages
	uses: actions/configure-pages@v3
	- name: Upload artifact
	uses: actions/upload-pages-artifact@v1
	with:
	# Upload dist repository
	path: './dist'
	- name: Deploy to GitHub Pages
	id: deployment
	uses: actions/deploy-pages@v1

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