Adding levels of organization and also visualizations

Makefile

@@ -7,7 +7,7 @@ SHELL := bash
 .SUFFIXES:
 .SECONDARY:
 
-OBO = http://purl.obolibrary.org/obo/
+OBO = http://purl.obolibrary.org/obo
 
 CORE = obo-core.owl
 MODULES = generic physical biological human science
@@ -83,6 +83,30 @@ templates/human.tsv:
 templates/science.tsv:
 	curl "$(SCIENCE_SHEET)" > $@
 
+
+# ---------- RELEASE ---------- #
+core.owl: core-edit.owl
+	robot merge -i $< -o $@
+
+%.json: %.owl
+	robot convert -i $< -o $@
+
+INVERSE_NEST_RELATION = $(OBO)/CORE_0003000
+OGSTYLE = obograph-style.json
+OGARGS = -s $(OGSTYLE)
+core.dot: core.json $(OGSTYLE)
+	og2dot.js $(OGARGS) $< > [email protected] && mv [email protected] $@
+
+# nest has-part
+core-n.dot: core.json $(OGSTYLE)
+	og2dot.js $(OGARGS) -I $(INVERSE_NEST_RELATION) $< > [email protected] && mv [email protected] $@
+
+core-subclass.dot: core.json $(OGSTYLE)
+	og2dot.js $(OGARGS) $< > [email protected] && mv [email protected] $@
+
+%.png: %.dot
+	dot $< -Grankdir=BT -Tpng -o [email protected] && mv [email protected] $@
+
 # ---------- ALIGNMENT ---------- #
 # Currentlh this requires installing some tools - I will set up a docker for running these...
 
@@ -98,3 +122,7 @@ matches/wd-closematches.ttl: manual-core.owl
 
 matches/wd-align.tsv: manual-core.owl matches/wd-closematches.ttl
 	rdfmatch -d rdf_matcher -G imports/matches-wd.owl --predicate skos:closeMatch --prefix CORE -f tsv -l -A ~/repos/onto-mirror/void.ttl -i prefixes.ttl -i $< -i wd-closematches.ttl exact > [email protected] &&  cut -f1-9,11,15-19 [email protected] > $@
+
+
+usage.tsv:
+	pl2sparql -f tsv -l -e -i core.owl -c util/core-usage.pro core_term_usage  > $@

README.md

@@ -7,3 +7,21 @@ Our current list of OBO Core terms is work in progress: [OBO Core Term Discussio
 We use [ROBOT](http://robot.obolibrary.org) to build extract those terms and build an experimental OWL file.
 
 To suggest adding a term to OBO Core, please submit an issue to our tracker.
+
+## Viewing OBO-Core
+
+We recommend using Protege.
+
+You can also look at pre-rendered PNGs (made using [obographviz](https://www.npmjs.com/package/obographviz)):
+
+Full ontology:
+
+![img](core.png)
+
+SubClassOf only:
+
+![img](core-subclass.png)
+
+With nesting over `levels` relationship:
+
+![img](core-n.png)