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149 changes: 149 additions & 0 deletions
149
orcid-scheduler-web/src/main/java/org/orcid/scheduler/loader/cli/EmailDomainToRorLoader.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,149 @@ | ||
| package org.orcid.scheduler.loader.cli; | ||
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| import java.io.FileReader; | ||
| import java.io.IOException; | ||
| import java.nio.file.Files; | ||
| import java.nio.file.Path; | ||
| import java.nio.file.Paths; | ||
| import java.util.AbstractMap; | ||
| import java.util.AbstractMap.SimpleEntry; | ||
| import java.util.ArrayList; | ||
| import java.util.HashMap; | ||
| import java.util.List; | ||
| import java.util.Map; | ||
|
|
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| import org.orcid.core.common.manager.EmailDomainManager; | ||
| import org.slf4j.Logger; | ||
| import org.slf4j.LoggerFactory; | ||
| import org.springframework.context.ApplicationContext; | ||
| import org.springframework.context.support.ClassPathXmlApplicationContext; | ||
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|
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| import com.fasterxml.jackson.databind.MappingIterator; | ||
| import com.fasterxml.jackson.dataformat.csv.CsvMapper; | ||
| import com.fasterxml.jackson.dataformat.csv.CsvParser; | ||
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|
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| public class EmailDomainToRorLoader { | ||
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| private static final Logger LOG = LoggerFactory.getLogger(EmailDomainToRorLoader.class); | ||
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| private String filePath; | ||
| private EmailDomainManager emailDomainManager; | ||
| List<List<String>> csvData; | ||
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| List<String> invalidDomains = new ArrayList<String>(); | ||
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| Map<String, DomainToRorMap> map = new HashMap<String, DomainToRorMap>(); | ||
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| public EmailDomainToRorLoader(String filePath) { | ||
| this.filePath = filePath; | ||
| init(filePath); | ||
| } | ||
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| public void execute() throws IOException { | ||
| load(this.filePath); | ||
| processCsvData(); | ||
| } | ||
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| private void init(String filePath) { | ||
| Path path = Paths.get(filePath); | ||
| if(!Files.exists(path)) { | ||
| LOG.error("File does not exists: '{}'", filePath); | ||
| System.exit(1); | ||
| } | ||
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| @SuppressWarnings("resource") | ||
| ApplicationContext context = new ClassPathXmlApplicationContext("orcid-core-context.xml"); | ||
| emailDomainManager = (EmailDomainManager) context.getBean("emailDomainManager"); | ||
| } | ||
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| private void load(String filePath) throws IOException { | ||
| LOG.info("Reading file {}", filePath); | ||
| FileReader fileReader = new FileReader(filePath); | ||
| CsvMapper csvMapper = new CsvMapper(); | ||
| csvMapper.enable(CsvParser.Feature.WRAP_AS_ARRAY); | ||
| MappingIterator<List<String>> it = csvMapper.readerForListOf(String.class).readValues(fileReader); | ||
|
|
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| if (it != null) { | ||
| csvData = new ArrayList<List<String>>(); | ||
| while(it.hasNext()) { | ||
| List<String> r = it.next(); | ||
| csvData.add(r); | ||
| } | ||
| } | ||
| } | ||
|
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| private void processCsvData() { | ||
| for (List<String> row : csvData) { | ||
| String domain = row.get(0); | ||
| String rorId = row.get(1); | ||
| boolean hasParent = false; | ||
| try { | ||
| String hasParentField = row.get(2); | ||
| hasParent = hasParentField == null ? false : Boolean.valueOf(hasParentField); | ||
| } catch(IndexOutOfBoundsException eoob) { | ||
| // Leave the hasParent as false | ||
| } | ||
|
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| if(!map.containsKey(domain)) { | ||
| DomainToRorMap dtrm = new DomainToRorMap(); | ||
| dtrm.setDomain(domain); | ||
| if(hasParent) { | ||
| dtrm.addIdWithParent(rorId); | ||
| } else { | ||
| dtrm.addIdWithNoParent(rorId); | ||
| } | ||
| map.put(rorId, dtrm); | ||
| } else { | ||
| DomainToRorMap dtrm = map.get(rorId); | ||
| if(hasParent) { | ||
| dtrm.addIdWithParent(rorId); | ||
| } else { | ||
| dtrm.addIdWithNoParent(rorId); | ||
| } | ||
| } | ||
| } | ||
| } | ||
|
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| private void storeDomainToRorMap() { | ||
| for(DomainToRorMap element : map.values()) { | ||
| // If the domain has only one entry with no parent, store that one | ||
| if(element.getIdsWithNoParent().size() == 1) { | ||
|
|
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| } else if(element.getIdsWithParent().size() == 1) { | ||
| // Else, if the domain has only one entry with parent, store that one | ||
| } else { | ||
| // Else log a warning because there is no way to provide a suggestion | ||
| } | ||
| } | ||
| } | ||
|
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| private class DomainToRorMap { | ||
| private String domain; | ||
| private List<String> idsWithParent = new ArrayList<String>(); | ||
| private List<String> idsWithNoParent = new ArrayList<String>(); | ||
|
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| public void setDomain(String domain) { | ||
| this.domain = domain; | ||
| } | ||
|
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| public String getDomain() { | ||
| return this.domain; | ||
| } | ||
|
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| public void addIdWithParent(String rorId) { | ||
| idsWithParent.add(rorId); | ||
| } | ||
|
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| public List<String> getIdsWithParent() { | ||
| return this.idsWithParent; | ||
| } | ||
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| public void addIdWithNoParent(String rorId) { | ||
| idsWithNoParent.add(rorId); | ||
| } | ||
|
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| public List<String> getIdsWithNoParent() { | ||
| return this.idsWithNoParent; | ||
| } | ||
| } | ||
| } |
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