Add testing support for postgres #191
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| name: "CI" | ||
| on: | ||
| pull_request: | ||
| push: | ||
| branches: | ||
| - main | ||
| schedule: | ||
| - cron: "0 7 * * *" | ||
| concurrency: | ||
| group: "${{ github.workflow }}-${{ github.ref }}" | ||
| cancel-in-progress: true | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| jobs: | ||
| tests: | ||
| runs-on: ${{ matrix.OS }}-latest | ||
| name: "tests" | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| os: ['ubuntu'] | ||
| sql-backend: ["sqlite"] | ||
| python-version: | ||
| - "3.9" | ||
| - "3.10" | ||
| - "3.11" | ||
| include: | ||
| - python-version: "3.11" | ||
| sql-backend: "postgres" | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| # we use mamba for installing postgres; otherwise we're pip to ensure | ||
| # compatiblity | ||
| - uses: conda-incubator/setup-miniconda | ||
| miniforge-variant: Mambaforge | ||
| python-version: ${{ matrix.python-version }} | ||
| - run: python -m pip install -e . | ||
| name: "Install" | ||
| - name: "Install database" | ||
| run: ./devtools/${{ sql-backend }}/install.sh | ||
| - name: "Create and start database" | ||
| run: ./devtools/${{ sql-backend }}/create.sh | ||
| - run: python -m pip install pytest pytest-cov | ||
| name: "Install testing tools" | ||
| - run: pytest -v --cov=exorcist --cov-report=xml | ||
| env: | ||
| EXORCIST_TEST_DB: ${{ matrix.sql-version }} | ||
| name: "Run tests" | ||
| - name: codecov | ||
| if: ${{ github.repository == 'OpenFreeEnergy/exorcist' | ||
| && github.event_name != 'schedule' }} | ||
| uses: codecov/codecov-action@v3 | ||
| with: | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
| file: coverage.xml | ||
| verbose: true | ||
