Update KNIME Tutorial (#225)

* fix broken links * fix broken links * relink developer quickstart guide * update TOPPView intensity mode description * update tutorials
OpenMS · Feb 17, 2024 · a5f784d · a5f784d
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diff --git a/docs/images/openms-user-tutorial/labelfree/PepQuantId.png b/docs/images/openms-user-tutorial/labelfree/PepQuantId.png
diff --git a/docs/images/openms-user-tutorial/labelfree/PepQuantIdNoAlign.png b/docs/images/openms-user-tutorial/labelfree/PepQuantIdNoAlign.png
diff --git a/...nd-tools/topp-tools/types-of-topp-tools/feature-detection-on-centroided-data.md b/...nd-tools/topp-tools/types-of-topp-tools/feature-detection-on-centroided-data.md
@@ -4,7 +4,7 @@ orphan: true
 Feature Detection on Centroided Data
 ====================================
 
-To quantify peptide features, TOPP offers the **FeatureFinder** tools. In this section the **FeatureFinderCentroided**
+To quantify peptide features, TOPP offers the **FeatureFinder** tools. In this section the `FeatureFinderCentroided`
 is used, which works only on centroided data. There are other FeatureFinders available that also work on profile data.
 
 For this example the file `LCMS-centroided.mzML` from the examples data is used (**File** > **Open example data**). In order

diff --git a/docs/openms-applications-and-tools/topp-tools/types-of-topp-tools/file-handling.md b/docs/openms-applications-and-tools/topp-tools/types-of-topp-tools/file-handling.md
@@ -6,7 +6,7 @@ File Handling
 
 ## General information about peak and feature maps
 
-For general information about a peak or feature map, use the **FileInfo** tool.
+For general information about a peak or feature map, use the `FileInfo` tool.
 
 - It can print RT, m/z and intensity ranges, the overall number of peaks, and the distribution of MS levels.
 - It can print a statistical summary of intensities.

diff --git a/docs/run-workflows-with-openms-tools/knime/tutorial.md b/docs/run-workflows-with-openms-tools/knime/tutorial.md
diff --git a/docs/topp-command-line-tools/consensus-peptide-identification.md b/docs/topp-command-line-tools/consensus-peptide-identification.md
@@ -19,7 +19,7 @@ fed to the **ConsensusID** tool (ConsensusID is currently usable for Mascot and
 
 To combine quantitation and identification results:
 
-Protein/peptide identifications can be annotated to quantitation results (featureXML, consensusXML) by the **IDMapper**
+Protein/peptide identifications can be annotated to quantitation results (featureXML, consensusXML) by the `IDMapper`
 tool. The combined results can then be exported by the **TextExporter** tool:
 
 [Conversion between OpenMS XML formats and text formats](conversion-between-openms-xml-formats-and-text-formats.md).
diff --git a/docs/tutorials-and-quickstart-guides/openms-user-tutorial.md b/docs/tutorials-and-quickstart-guides/openms-user-tutorial.md
diff --git a/docs/tutorials-and-quickstart-guides/tutorials.md b/docs/tutorials-and-quickstart-guides/tutorials.md
@@ -110,7 +110,7 @@ If you want a graphical user interface to interact with, then use TOPPView. Foll
 
 1. Go to **File** > **Open file** and open a file by following the prompts.
 2. Go to **Tools** > **Apply TOPP tool (whole layer)**.
-3. Set **TOPP tool** to **FileInfo** and **output argument** to **out**.
+3. Set **TOPP tool** to `FileInfo` and **output argument** to **out**.
 4. Load an existing INI file by clicking **Load** and selecting an INI file from the file importer. If you don’t have an INI file, click **Store**, enter a file name and click **OK** to generate an INI file, then click **Load** and load the file.
 
    ![apply topp tool to layer](/images/tutorials/toppview/apply-topp-tool-to-layer.png)