Improved installation instructions and separate installation from bas…

…ic python.
OpenSourceEconomics · Oct 20, 2023 · cbc0aa9 · cbc0aa9
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diff --git a/_downloads/8c5c2ab8274b50eb811e7e2fa2464bb9/python_basics-assignment_and_scalar_types.pdf b/_downloads/8c5c2ab8274b50eb811e7e2fa2464bb9/python_basics-assignment_and_scalar_types.pdf
diff --git a/_downloads/8d1c67ebba4b5b88ead060edaa601c5e/tools-unix_navigation.pdf b/_downloads/8d1c67ebba4b5b88ead060edaa601c5e/tools-unix_navigation.pdf
diff --git a/_downloads/910cbca26824838bbd0d41e3e23aa708/python_basics-tracebacks.pdf b/_downloads/910cbca26824838bbd0d41e3e23aa708/python_basics-tracebacks.pdf
diff --git a/_downloads/932540eb00d93aa8e7b88a388b3b61b1/environment.yml b/_downloads/932540eb00d93aa8e7b88a388b3b61b1/environment.yml
@@ -0,0 +1,27 @@
+---
+name: epp
+channels: [conda-forge, nodefaults]
+dependencies:
+  - estimagic
+  - nlopt
+  - jupyter
+  - matplotlib
+  - numba
+  - numpy
+  - openpyxl
+  - pandas >= 2.1
+  - pip
+  - plotly
+  - pre-commit
+  - pyarrow >= 13.0
+  - pytask >= 0.4
+  - pytest
+  - python==3.11
+  - scikit-learn
+  - scipy
+  - seaborn
+  - statsmodels
+  - toml
+  - line_profiler
+  - snakeviz
+  - pip: [kaleido, pdbp]
diff --git a/_downloads/9bbb01d4edb43a1a5e74132d956c2c92/python_basics-dicts.pdf b/_downloads/9bbb01d4edb43a1a5e74132d956c2c92/python_basics-dicts.pdf
diff --git a/...aa53c6a9367318583e7ba9e06a07/python_installation_execution-executing_notebook_browser.pdf b/...aa53c6a9367318583e7ba9e06a07/python_installation_execution-executing_notebook_browser.pdf
diff --git a/_downloads/a5cd74a273b58b2a37c0fb61b0829873/pandas-datatypes.pdf b/_downloads/a5cd74a273b58b2a37c0fb61b0829873/pandas-datatypes.pdf
diff --git a/_downloads/a8b235424fc9457bc5ffeef13bceb310/projects-what_does_pytask_do.pdf b/_downloads/a8b235424fc9457bc5ffeef13bceb310/projects-what_does_pytask_do.pdf
diff --git a/_downloads/acd681a25c563b33ae9783852ff1c297/pandas-creating_variables.pdf b/_downloads/acd681a25c563b33ae9783852ff1c297/pandas-creating_variables.pdf
diff --git a/_downloads/b91e063a3f0a95945309232042458e89/software_engineering-style_guides.pdf b/_downloads/b91e063a3f0a95945309232042458e89/software_engineering-style_guides.pdf
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diff --git a/_downloads/cb575c6779071de1750436c36c0f21ab/pandas-selection.pdf b/_downloads/cb575c6779071de1750436c36c0f21ab/pandas-selection.pdf
diff --git a/_downloads/d23b6c04dfb5250081c1cce2563ac857/texts-markdown_syntax.pdf b/_downloads/d23b6c04dfb5250081c1cce2563ac857/texts-markdown_syntax.pdf
diff --git a/_downloads/d6de29a86718ccdca654d77a04d7803d/software_engineering-pytest_error_handling.pdf b/_downloads/d6de29a86718ccdca654d77a04d7803d/software_engineering-pytest_error_handling.pdf
diff --git a/_downloads/da85e84f301287521c06ec8bfc78669c/python_basics-if_conditions.pdf b/_downloads/da85e84f301287521c06ec8bfc78669c/python_basics-if_conditions.pdf
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diff --git a/_downloads/e447272ecd78c885703278ae78499cac/python_basics-for_loops.pdf b/_downloads/e447272ecd78c885703278ae78499cac/python_basics-for_loops.pdf
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diff --git a/...loads/e4bba0bad5b8b364b84a1dff5a090cd8/python_installation_execution-executing_pytask.pdf b/...loads/e4bba0bad5b8b364b84a1dff5a090cd8/python_installation_execution-executing_pytask.pdf
diff --git a/...loads/e57f785da689e76e22de44c7e95d151d/python_installation_execution-executing_pytest.pdf b/...loads/e57f785da689e76e22de44c7e95d151d/python_installation_execution-executing_pytest.pdf
diff --git a/_downloads/eb76c8cf78f480f510d8e685f897a080/pandas-dataframes_and_series.pdf b/_downloads/eb76c8cf78f480f510d8e685f897a080/pandas-dataframes_and_series.pdf
diff --git a/_downloads/f35c8681367644c9662366746a03df79/software_engineering-naming.pdf b/_downloads/f35c8681367644c9662366746a03df79/software_engineering-naming.pdf
diff --git a/_images/14_activate_epp.png b/_images/14_activate_epp.png
diff --git a/_images/15_conda_info.png b/_images/15_conda_info.png
diff --git a/_images/16_execution_policy.png b/_images/16_execution_policy.png
diff --git a/_images/17_conda_init.png b/_images/17_conda_init.png
diff --git a/_images/18_cmd.png b/_images/18_cmd.png
diff --git a/_sources/python_installation_execution/content_objectives.md b/_sources/python_installation_execution/content_objectives.md
@@ -0,0 +1,7 @@
+# Content and Learning Objectives
+
+The topics in this chapter ...
+
+After working through this chapter, you should be able to:
+
+- ...
diff --git a/_sources/python_installation_execution/executing_notebook_browser/objectives_materials.ipynb b/_sources/python_installation_execution/executing_notebook_browser/objectives_materials.ipynb
@@ -0,0 +1,38 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Executing notebooks in a browser\n",
+    "\n",
+    "## Learning Objectives\n",
+    "\n",
+    "After working through this topic, you should be able to:\n",
+    "\n",
+    "- Activate a conda environment in your shell\n",
+    "- Start jupyter notebooks in your browser from the shell\n",
+    "\n",
+    "## Materials\n",
+    "\n",
+    "Here is the [screencast](https://player.uni-bonn.educast.nrw/4881691a-00c3-4a83-9fc9-deffac2dcf72) and these are the\n",
+    "[slides](python_installation_execution-executing_notebook_browser.pdf).\n"
+   ]
+  }
+ ],
+ "metadata": {
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}
diff --git a/_sources/python_installation_execution/executing_notebook_vscode/objectives_materials.ipynb b/_sources/python_installation_execution/executing_notebook_vscode/objectives_materials.ipynb
@@ -0,0 +1,39 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Executing jupyter notebooks in VS Code\n",
+    "\n",
+    "## Learning Objectives\n",
+    "\n",
+    "After working through this topic, you should be able to:\n",
+    "\n",
+    "- Select different jupyter kernels in VS Code\n",
+    "- Run jupyter notebooks in VS Code\n",
+    "\n",
+    "## Materials\n",
+    "\n",
+    "Here is the\n",
+    "[screencast](https://player.uni-bonn.educast.nrw/3988cf3c-9382-481f-98ac-fe14b91fb8f1)\n",
+    "and these are the [slides](python_installation_execution-executing_notebook_vscode.pdf)."
+   ]
+  }
+ ],
+ "metadata": {
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}
diff --git a/_sources/python_installation_execution/executing_py_shell/objectives_materials.ipynb b/_sources/python_installation_execution/executing_py_shell/objectives_materials.ipynb
@@ -0,0 +1,95 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Executing `.py` files from the shell\n",
+    "\n",
+    "## Learning Objectives\n",
+    "\n",
+    "After working through this topic, you should be able to:\n",
+    "\n",
+    "- Activate a conda environment in your shell\n",
+    "- Execute python files from your shell\n",
+    "\n",
+    "## Materials\n",
+    "\n",
+    "We assume that you have already watched the screencasts on installation and have a \n",
+    "fully working conda installation on your computer. \n",
+    "\n",
+    "We also assume that you have watched the screencasts on the shell and know how to \n",
+    "navigate to directories in a shell. \n",
+    "\n",
+    "Here is the\n",
+    "[screencast](https://player.uni-bonn.educast.nrw/fdb5d582-02db-4ccb-818a-d415de3bef61)\n",
+    "and these are the [slides](python_installation_execution-executing_py_shell.pdf).\n",
+    "\n",
+    "## Quiz"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from jupyterquiz import display_quiz\n",
+    "\n",
+    "content = [\n",
+    "    {\n",
+    "        \"question\": (\n",
+    "            \"Your project's folder contains the following files: exercise_1.py, \\\n",
+    "            a folder called data, and a folder called results. Your shell is currently \\\n",
+    "            in the data folder. Which of the following commands would you use to run \\\n",
+    "            the exercise_1.py script?\"\n",
+    "        ),\n",
+    "        \"type\": \"many_choice\",\n",
+    "        \"answers\": [\n",
+    "            {\n",
+    "                \"answer\": \"'python exercise_1.py'\",\n",
+    "                \"correct\": False,\n",
+    "                \"feedback\": \"This would work if you were in the folder containing \\\n",
+    "                exercise_1.py.\",\n",
+    "            },\n",
+    "            {\n",
+    "                \"answer\": \"'python ../exercise_1.py'\",\n",
+    "                \"correct\": True,\n",
+    "                \"feedback\": \"This works because ../ moves you up one folder, \\\n",
+    "                    and then you can run the script from there.\",\n",
+    "            },\n",
+    "            {\n",
+    "                \"answer\": \"'python ~/exercise_1.py'\",\n",
+    "                \"correct\": False,\n",
+    "                \"feedback\": \"This would work if you were in your home folder (on a \\\n",
+    "                    Mac system).\",\n",
+    "            },\n",
+    "            {\n",
+    "                \"answer\": \"'cd ..' and then 'python exercise_1.py'\",\n",
+    "                \"correct\": True,\n",
+    "                \"feedback\": \"This works because cd .. moves you up one folder, \\\n",
+    "                    and then you can run the script from there.\",\n",
+    "            },\n",
+    "        ],\n",
+    "    },\n",
+    "]\n",
+    "display_quiz(content, colors=\"fdsp\")"
+   ]
+  }
+ ],
+ "metadata": {
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}
diff --git a/_sources/python_installation_execution/executing_py_vscode/objectives_materials.ipynb b/_sources/python_installation_execution/executing_py_vscode/objectives_materials.ipynb
@@ -0,0 +1,39 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Executing `.py` files in VS Code\n",
+    "\n",
+    "## Learning Objectives\n",
+    "\n",
+    "After working through this topic, you should be able to:\n",
+    "\n",
+    "- Select different python interpreters in VS Code\n",
+    "- Run python files in VS Code\n",
+    "\n",
+    "## Materials\n",
+    "\n",
+    "Here is the\n",
+    "[screencast](https://player.uni-bonn.educast.nrw/527c21d3-ef88-4e70-a62d-a2261436203f)\n",
+    "and these are the [slides](python_installation_execution-executing_py_vscode.pdf).\n"
+   ]
+  }
+ ],
+ "metadata": {
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}
diff --git a/_sources/python_installation_execution/executing_pytask/objectives_materials.ipynb b/_sources/python_installation_execution/executing_pytask/objectives_materials.ipynb
@@ -0,0 +1,73 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Running Python code via pytask\n",
+    "\n",
+    "## Learning Objectives\n",
+    "\n",
+    "After working through this topic, you should be able to:\n",
+    "\n",
+    "- Execute a reproducible project using pytask\n",
+    "- Activate the correct environment for using pytask\n",
+    "\n",
+    "## Materials\n",
+    "\n",
+    "Here is the \n",
+    "[screencast](https://player.uni-bonn.educast.nrw/993ed1d4-7f3f-45ef-bf1b-664f794490c2) \n",
+    "and these are the [slides](python_installation_execution-executing_pytask.pdf).\n",
+    "\n",
+    "## Additional Materials\n",
+    "\n",
+    "- The pytask [command line interface](https://pytask-dev.readthedocs.io/en/stable/reference_guides/command_line_interface.html)\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {
+    "tags": [
+     "remove-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "from epp_topics.quiz_utilities import display_quiz\n",
+    "\n",
+    "content = {\n",
+    "    \"In contrast to other ways of executing Python code\": {\n",
+    "        \"Pytask runs multiple .py files at once\": False,\n",
+    "        \"Pytask runs functions instead of entire `.py` files\": True,\n",
+    "        \"Pytask works for notebooks and `.py` files\": False,\n",
+    "        \"Pytasks automatically install all dependencies for you\": False,\n",
+    "    },\n",
+    "    \"Which of the following is true?\": {\n",
+    "        \"Pytask saves runtime by executing only tasks that need to be executed\": True,\n",
+    "        \"Pytask only works if you define functions\": True,\n",
+    "        \"If you use pytask, you don't need git\": False,\n",
+    "        \"Pytask requires a very specific directory structure\": False,\n",
+    "    },\n",
+    "}\n",
+    "\n",
+    "display_quiz(content)"
+   ]
+  }
+ ],
+ "metadata": {
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}
diff --git a/_sources/python_installation_execution/executing_pytest/objectives_materials.ipynb b/_sources/python_installation_execution/executing_pytest/objectives_materials.ipynb
@@ -0,0 +1,73 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Running Python code via pytest\n",
+    "\n",
+    "## Learning Objectives\n",
+    "\n",
+    "After working through this topic, you should be able to:\n",
+    "\n",
+    "- Execute all tests in a project using pytest\n",
+    "- Activate the correct environment for using pytest\n",
+    "\n",
+    "## Materials\n",
+    "\n",
+    "Here is the \n",
+    "[screencast](https://player.uni-bonn.educast.nrw/31bef7c1-79cf-4281-98a8-3187d0ea9bdc) \n",
+    "and these are the [slides](python_installation_execution-executing_pytest.pdf).\n",
+    "\n",
+    "## Additional Materials\n",
+    "\n",
+    "- The pytest \n",
+    "  [command line interface](https://docs.pytest.org/en/stable/how-to/usage.html)\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {
+    "tags": [
+     "remove-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "from epp_topics.quiz_utilities import display_quiz\n",
+    "\n",
+    "content = {\n",
+    "    \"In contrast to other ways of executing Python code\": {\n",
+    "        \"Pytest runs multiple .py files at once\": False,\n",
+    "        \"Pytest runs functions instead of entire `.py` files\": True,\n",
+    "        \"Pytest works for notebooks and `.py` files\": False,\n",
+    "        \"Pytests automatically install all dependencies for you\": False,\n",
+    "    },\n",
+    "    # \"Which of the following is true?\": {\n",
+    "    #     \"Pytest only works if you define functions\": True,\n",
+    "    #     \"If you use pytest, you don't need git\": False,\n",
+    "    #     \"Pytest requires a very specific directory structure\": False,\n",
+    "    # },\n",
+    "}\n",
+    "\n",
+    "display_quiz(content)"
+   ]
+  }
+ ],
+ "metadata": {
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}