cambios occ models result 3

Nueva funcionalidad

scripts/occ_model_resultsv3/occ_model_resultsv3.R

@@ -259,14 +259,19 @@ occ_avg<- if(nrow(test_models)<=1){
   #####
   final_path<- file.path(outputFolder, "final.csv") # Define the file path for the 'val_wkt_path' output
   write.csv(final, final_path, row.names = T ) # Write the 'val_wkt_path' output
-  #### Outputing result to JSON ####
+
+  summary_occ_path<- file.path(outputFolder, "summary_occModel.txt") # Define the file path for the 'val_wkt_path' output
 
+  sink(summary_occ_path)
+  print(occ_model)
+  sink()
 
   #### Outputing result to JSON ####
   output<- list(occprob_raster_export  = occprob_raster_path,
                 occse_raster_export = occse_raster_path,
                 occPlotFacet= occPlotFacet_path,
-                final_export = final_path, VEB_export = FVEB)
+                final_export = final_path, VEB_export = FVEB,
+                summary_occ_path= summary_occ_path)
 
 
 

scripts/occ_model_resultsv3/occ_model_resultsv3.yml

@@ -11,17 +11,17 @@ inputs:
     label: site_covs
     description: "List of site variables (site/landscape characteristics that influence species detection and occupancy). They can be specified by name or through the directory where they are stored in .tif format. Names must match the columns in camptrap_data or will be omitted."
     type: image/tiff;application=geotiff[]
-    example: ["scripts/CamTrap_format2/input/stac"]
+    example: ["bio18_1981_01_01_1982_01_01", "bio4_1981_01_01_1982_01_01" , "bio7_1981_01_01_1982_01_01"]
   site_covs_Layers:
     label: site_covs_Layers
     description: "List of site variables (site/landscape characteristics that influence species detection and occupancy). They can be specified by name or through the directory where they are stored in .tif format. Names must match the columns in camptrap_data or will be omitted."
     type: image/tiff;application=geotiff[]
-    example: ["scripts/CamTrap_format2/input/stac"]
+    example: ["scripts/occ_model_resultsv3/input/"]
   obs_covs:
     label: obs_covs
     description: "List of observation variables (hour, lunar phase, climate) that must match columns in camptrap_data or will be omitted. As they can vary by event, they must be grouped/collapsed for the unmarked object. When they are factors, they are not rounded. Numeric variables are specified as eventTime|1, where 1 is the rounding value. For temporal variables, use eventTime|1|hour. Temporal units from lubridate::round_date are accepted."
     type: text[]
-    example: ["eventTime|1|hour"]
+    example: ["duration_minutes"]
   nsim:
     label: nsim
     description: "The number of bootstrapped samples"
@@ -33,6 +33,10 @@ inputs:
     type: boolean
     example: false
 outputs:
+  summary_occ_path:
+    label: summary_occ_path
+    description: "Summary of ocupation model"
+    type: text/csv
   occprob_raster_export:
     label: occprob_raster_export
     description: "Raster map with occupancy model probability and standar error"