Merge remote-tracking branch 'origin/main' into protcon_pipeline

LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2023 GEO-BON
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

README.md

@@ -101,7 +101,7 @@ description: # Targetted to those who will interpret pipeline results and edit p
 author: # 1 to many
   - name: # Full name
     identifier: # Optional, full URL of a unique digital identifier such as an ORCID
-license: # Optional, examples here: https://creativecommons.org/about/cclicenses/
+license: # Optional. If unspecified, the project's MIT license will apply.
 external_link: # Optional, link to a separate project, github repo, etc.
 timeout: # Optional, in minutes. By defaults steps time out after 1h to avoid hung process to consume resources. It can be made longer for heavy processes.
 
@@ -257,7 +257,9 @@ Pipelines also have inputs and outputs. In order to run, a pipeline needs to spe
 ### Pipeline editor
 The pipeline editor allows you to create pipelines by plugging steps together.
 
-The left pane shows the available steps, the right pane shows the canvas.
+The left pane shows the available steps, the main section shows the canvas.
+
+On the right side, a collapsible pane allows to edit the labels and descriptions of the pipeline inputs and outputs.
 
 **To add a step:** drag and drop from the left pane to the canvas. Steps that are single scripts will display with a single border, while steps that are pipelines will display with a double border.
 
@@ -302,6 +304,11 @@ Add an **output** node linked to a step output to specify that this output is an
 
 ![image](https://user-images.githubusercontent.com/6223744/181108988-97d988ca-8f4b-45b1-b4a3-32e90821b68b.png)
 
+Pipeline inputs and outputs then appear in a collapsible pane on the right of the canvas, where their descriptions and labels can be edited.
+
+<img src="https://github.com/GEO-BON/biab-2.0/assets/6223744/215b75db-7198-486d-880d-87c0b340668b" height="218">
+
+Once edited, make sure to save your work before leaving the page.
 
 ### Saving and loading
 The editor _does not_ allow you to edit files live on the server. Files need to be committed to the github repo using git.

compose.yml

@@ -3,7 +3,7 @@
 version: "3.7"
 
 services:
-# This can be accessed within the docker network with http://biab-script-server:8081/script/...
+  # This can be accessed within the docker network with http://biab-script-server:8081/script/...
   script-server:
     container_name: biab-script-server
     volumes:
@@ -12,7 +12,7 @@ services:
       - ./output:/output:rw
       - /var/run/docker.sock:/var/run/docker.sock
     expose:
-      - '8080'
+      - "8080"
     environment:
       - SCRIPT_LOCATION=/scripts
       - PIPELINES_LOCATION=/pipelines
@@ -27,7 +27,6 @@ services:
       - runner-r
       - runner-julia
 
-
   runner-r:
     container_name: biab-runner-r
     image: geobon/bon-in-a-box:runner-r
@@ -67,7 +66,7 @@ services:
     container_name: http-rev-prox
     image: nginx
     ports:
-      - '80:80'
+      - "80:80"
     volumes:
       - /var/run/docker.sock:/tmp/docker.sock:ro
       - ./output:/static/output:ro
@@ -76,9 +75,12 @@ services:
 
   tiler:
     container_name: biab-tiler
-    image: ghcr.io/developmentseed/titiler:0.12.0
+    image: ghcr.io/developmentseed/titiler:latest
     volumes:
-      - ./output:/output:rw
+      - ./output:/output:ro
     environment:
       - PORT=8000
       - WORKERS_PER_CORE=1
+      - TITILER_API_CORS_ORIGINS=*
+    extra_hosts:
+      - "host.docker.internal:host-gateway"

http-proxy/conf.d-prod/ngnix.conf

@@ -11,23 +11,30 @@ server {
         proxy_read_timeout 3600;
         proxy_connect_timeout 3600;
         proxy_send_timeout 3600;
+        add_header Access-Control-Allow-Origin *;
     }
 
     location /pipeline/ {
         proxy_pass http://biab-script-server:8080/pipeline/;
+        add_header Access-Control-Allow-Origin *;
     }
 
+    location /api/ {
+        proxy_pass http://biab-script-server:8080/api/;
+    }
 
     location /tiler/ {
         proxy_pass http://biab-tiler:8000/;
     }
 
     location / {
         proxy_pass http://biab-ui-prod:80;
+        add_header Access-Control-Allow-Origin *;
     }
 
     location /output/ {
         root /static/;
+        add_header Access-Control-Allow-Origin *;
     }
 
 }

http-proxy/conf.d/ngnix.conf

@@ -11,10 +11,16 @@ server {
         proxy_read_timeout 3600;
         proxy_connect_timeout 3600;
         proxy_send_timeout 3600;
+        add_header Access-Control-Allow-Origin *;
     }
 
     location /pipeline/ {
         proxy_pass http://biab-script-server:8080/pipeline/;
+        add_header Access-Control-Allow-Origin *;
+    }
+
+    location /api/ {
+        proxy_pass http://biab-script-server:8080/api/;
     }
 
     ## Server to use when making changes to the OpenAPI specification. (dev only)
@@ -33,11 +39,13 @@ server {
         # https://stackoverflow.com/a/69079753/3519951
         proxy_set_header Upgrade $http_upgrade;
         proxy_set_header Connection "upgrade";
+        add_header Access-Control-Allow-Origin *;
         # --- end hot reloading
     }
 
     location /output/ {
         root /static/;
+        add_header Access-Control-Allow-Origin *;
     }
 
 }