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rework to use python3 #1

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Major changes

  • changed syntax to python3
  • fixed a bug causing an endless loop if --minExon is bigger than all regions in the target definition

Minor changes

  • optimised parameter parsing (added defaults and types as well as help)
  • changed string formating to f"" syntax
  • reworked a few loops for faster runtime
  • added an .Md file for the github page

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@rlupat
whats the status here?

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