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tasksecondary_files{
input {FileinpFileinp_csv
}
command <<<
set -e
echo~{inp}
>>>
output {Array[File] out = glob("*.txt")
# Expect to see # Array[File] out_csv = ...
}
}
It's missing the output:
Array[File] out_csv = ...
This is probably pretty tricky without a map function in WDL. It might not even be strictly possible. Just thought it be better documented that this is an issue.
The text was updated successfully, but these errors were encountered:
Consider the tool with some GenericFile with secondaries
[".csv"]
(eg:base.txt
w/ sec:base.txt.csv
:This gives the approx WDL translation:
It's missing the output:
This is probably pretty tricky without a
map
function in WDL. It might not even be strictly possible. Just thought it be better documented that this is an issue.The text was updated successfully, but these errors were encountered: