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23 Open 17 Closed
23 Open 17 Closed
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Issues list

Installation fails with python 3.12
#121 opened Jan 26, 2024 by ddeepwell
Some package dependencies are out of date
#120 opened Jan 16, 2024 by ddeepwell
Failed translation of Galaxy tool with ID containing a macro
#119 opened Jan 16, 2024 by ddeepwell
Failed translation of Galaxy tool with output collections containing data with same name
#118 opened Jan 16, 2024 by ddeepwell
ModuleNotFoundError: No module named 'cwl_utils.parser_v1_2'
#105 opened Nov 17, 2021 by ntachukwu
1
fromwdl: missing optional inputs should result in empty conversion of WDL expressions, not half-empty strings with "null" inside
#97 opened Aug 30, 2021 by mr-c
2
CWL generation: invalid result with output_type=File(), selector=Stdout() → "outputEval: _stderr"
#95 opened Aug 30, 2021 by mr-c
2
1
fromwdl: can't handle single character identifiers
#92 opened Aug 30, 2021 by mr-c
1
convert to WDL: force co-localization of secondary_files
#90 opened Aug 26, 2021 by mr-c
1
2
Translation for array of array of file
#67 opened Feb 16, 2021 by junyk
3
Janis is not creating secondary output in WDL for array of outputs in tool
#62 opened Jan 29, 2021 by illusional
Add "all-in-one" mechanism to janis translate
#60 opened Jan 27, 2021 by illusional
Add ReadJsonOperator
#59 opened Jan 26, 2021 by illusional
Allow Stdout / stderr to better participate in operations
#58 opened Jan 26, 2021 by illusional
Using transformations to pre-install R packages.
#42 opened Oct 13, 2020 by drtconway
Conditionals' switches do not always work if one of the step input files requires assert_not_null()
#36 opened Jul 4, 2020 by rlupat
3
Cromwell configuration
#34 opened Jun 30, 2020 by drtconway
4
Janis should throw an error if it detects two tools of same ID+version but are different
#32 opened Jun 18, 2020 by illusional
Threading groups of inputs
#29 opened Jun 4, 2020 by drtconway
translate to bash
#26 opened May 26, 2020 by drtconway
Implicit dependencies
#25 opened May 25, 2020 by illusional
2
Citations
#24 opened May 25, 2020 by drtconway
1
Produce a BashTool
#20 opened Apr 21, 2020 by illusional
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