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index.html

@@ -200,7 +200,7 @@ <h3 class="anchored" data-anchor-id="current-and-future-workshop-sessions">Curre
 </thead>
 <tbody>
 <tr class="odd">
-<td><a href="./sessions/2_nf_dev_intro.html">Creating a workflow</a></td>
+<td><a href="./sessions/2_nf_dev_intro.html">Basic to Create a Nextflow Workflow</a></td>
 <td>Introduction to developing bioinformatics workflow with Nextflow (Part1)</td>
 <td>29th May 2024</td>
 </tr>

sessions/2_nf_dev_intro.html

@@ -248,10 +248,25 @@ <h3 class="anchored" data-anchor-id="workshop-schedule">Workshop schedule</h3>
 <td>Every week</td>
 </tr>
 <tr class="odd">
-<td><a href="../workshops/3.1_creating_a_workflow.html">Creating a workflow</a></td>
-<td>Introduction to Nextflow: Introduce nextflow’s core features and concepts; including CLI and how to run it on Peter Mac cluster</td>
+<td><a href="../workshops/3.1_creating_a_workflow.html">Basic to Create a Nextflow Workflow</a></td>
+<td>Introduction to nextflow channels, processes, data types and workflows</td>
 <td>29th May 2024</td>
 </tr>
+<tr class="even">
+<td>Developing Reusable Workflows</td>
+<td>Introduction to modules imports, sub-workflows, setting up test-profile, and common useful groovy functions</td>
+<td>5th Jun 2024</td>
+</tr>
+<tr class="odd">
+<td>Working with nf-core Templates</td>
+<td>Introduction to developing nextflow workflow with nf-core templates</td>
+<td>12th Jun 2024</td>
+</tr>
+<tr class="even">
+<td>Working with Nextflow Built-in Functions</td>
+<td>Introduction to nextflow operators, metadata propagation, grouping, and splitting</td>
+<td>19th Jun 2024</td>
+</tr>
 </tbody>
 </table>
 </section>

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workshops/3.1_creating_a_workflow.html

@@ -896,7 +896,7 @@ <h3 class="anchored" data-anchor-id="multiqc-report"><strong>4.1.6. MultiQC Repo
 <span id="cb54-16"><a href="#cb54-16" aria-hidden="true" tabindex="-1"></a>}</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <p>In the <code>MULTIQC</code> process, the <code>multiqc</code> command is performed on both <code>quantification</code> and <code>fastqc</code> inputs, and publishes the report to a directory defined by the <code>outdir</code> parameter. Only files that match the declaration in the output block are published, not all the outputs of a process. By default, files are published to the target folder creating a symbolic link to the file produced in the process execution directory. This behavior can be modified using the <code>mode</code> option, eg. <code>copy</code>, which copies the file from the process execution directory to the specified output directory.</p>
 <p>Add the following to the end of workflow scope:</p>
-<div class="sourceCode" id="cb55"><pre class="sourceCode default code-with-copy"><code class="sourceCode default"><span id="cb55-1"><a href="#cb55-1" aria-hidden="true" tabindex="-1"></a>nultiqc_ch = MULTIQC(quant_ch, fastqc_ch)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<div class="sourceCode" id="cb55"><pre class="sourceCode default code-with-copy"><code class="sourceCode default"><span id="cb55-1"><a href="#cb55-1" aria-hidden="true" tabindex="-1"></a>multiqc_ch = MULTIQC(quant_ch, fastqc_ch)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <p>Run the pipeline, specifying an output directory using the <code>outdir</code> parameter:</p>
 <div class="sourceCode" id="cb56"><pre class="sourceCode default code-with-copy"><code class="sourceCode default"><span id="cb56-1"><a href="#cb56-1" aria-hidden="true" tabindex="-1"></a>nextflow run rnaseq.nf --outdir "results"</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <p>A <code>results</code> directory containing the output <code>multiqc</code> reports will be created outside of the process execution directory.</p>