Skip to content

Commit

Permalink
Update index.md
Browse files Browse the repository at this point in the history
  • Loading branch information
@sgosline
sgosline authored Sep 27, 2023
1 parent a749d88 commit bc33137
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion docs/index.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -110,7 +110,7 @@ cwltool https://raw.githubusercontent.com/PNNL-CompBio/decomprolute/main/metrics
To assess which algorithm/signature matrix best agree on simulated data, you can use *either* mRNA or protein data as input into the [run-best-alg-by-sim](./metrics/data-sim/run-best-alg-by-sim.cwl) workflow. Below is an example using our test data.

``` shell
cwltool https://raw.githubusercontent.com/PNNL-CompBio/decomprolute/main/metrics/data-sim/run-best-alg-by-sim.cwl --datFile https://raw.gihubusercontent.com/PNNL-CompBio/decomprolute/main/toy_data/TOY_log2ratio_protein_abundance_withNA.tsv --data-type prot
cwltool https://raw.githubusercontent.com/PNNL-CompBio/decomprolute/main/metrics/data-sim/run-best-alg-by-sim.cwl --datFile https://raw.gihubusercontent.com/PNNL-CompBio/decomprolute/main/toy_data/ov-all-prot-reduced.tsv --data-type prot
```

## Evaluate metrics on new algorithm or signature matrix.
Expand Down

0 comments on commit bc33137

Please sign in to comment.