cleaned up sample mapping more, got dates to be correct #24
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build-upload-docker | |
| defaults: | |
| run: | |
| working-directory: ./ | |
| on: | |
| push: | |
| branches: | |
| - '**' | |
| paths: | |
| - build_script.py | |
| - .github/ | |
| - zfBmd/ | |
| - zfExp/ | |
| - sampleChemMapping/ | |
| - dbSchema/ | |
| - exposome/ | |
| workflow_dispatch: | |
| jobs: | |
| build-and-push-sample: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push sampleChem | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: sampleChemMapping/Dockerfile | |
| tags: sgosline/srp-samplechem:latest | |
| platforms: linux/amd64,linux/arm64 | |
| push: true | |
| build-push-expo: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push expo | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: exposome/Dockerfile | |
| platforms: linux/amd64,linux/arm64 | |
| tags: sgosline/srp-exposome:latest | |
| push: true | |
| build-push-exp: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push expr | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: zfExp/Dockerfile | |
| push: true | |
| platforms: linux/amd64,linux/arm64 | |
| tags: sgosline/srp-zfexp | |
| # - name: Build and push bmd | |
| # uses: docker/build-push-action@v6 | |
| # with: | |
| # context: zfBmd | |
| # push: true | |
| # tags: sgosline/srp-zfbmd:latest | |
| # platforms: linux/amd64,linux/arm64 | |
| # - name: Build and push bmd2Samps | |
| # uses: docker/build-push-action@v6 | |
| # with: | |
| # context: old/bmd2Samps | |
| # push: true | |
| # tags: sgosline/srp-bmd2samps:v1 | |
| # platforms: linux/amd64,linux/arm64 | |
| # - name: Build and push version 2 bmd2Samps | |
| # uses: docker/build-push-action@v6 | |
| # with: | |
| # context: old/bmd2Samps_v2 | |
| # push: true | |
| # tags: sgosline/srp-bmd2samps:latest | |
| # platforms: linux/amd64,linux/arm64 |