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  1. pbbioconda pbbioconda Public

    PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

    256 45

  2. ccs ccs Public

    CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

    117 30

  3. pbmm2 pbmm2 Public

    A minimap2 frontend for PacBio native data formats

    Raku 178 30

  4. pb-metagenomics-tools pb-metagenomics-tools Public

    Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

    HTML 181 35

  5. trgt trgt Public

    Tandem repeat genotyping and visualization from PacBio HiFi data

    Rust 113 10

  6. hifihla hifihla Public

    An HLA star-calling tool for PacBio HiFi data types

    21 2

Repositories

Showing 10 of 90 repositories
  • trgt Public

    Tandem repeat genotyping and visualization from PacBio HiFi data

    PacificBiosciences/trgt’s past year of commit activity
    Rust 113 10 26 0 Updated Jan 17, 2025
  • pbcore Public

    A Python library for reading and writing PacBio® data files

    PacificBiosciences/pbcore’s past year of commit activity
    Python 40 27 1 2 Updated Jan 17, 2025
  • sawfish Public

    Structural variant discovery and genotyping from mapped PacBio HiFi data

    PacificBiosciences/sawfish’s past year of commit activity
    Rust 36 1 1 0 Updated Jan 16, 2025
  • pb-StarPhase Public

    A phase-aware pharmacogenomic diplotyper for PacBio datasets

    PacificBiosciences/pb-StarPhase’s past year of commit activity
    Rust 12 1 0 0 Updated Jan 16, 2025
  • jasmine Public

    Predict 5mC in PacBio HiFi reads

    PacificBiosciences/jasmine’s past year of commit activity
    36 BSD-3-Clause-Clear 1 0 0 Updated Jan 16, 2025
  • PacificBiosciences/HiFi-human-WGS-WDL’s past year of commit activity
    WDL 55 BSD-3-Clause-Clear 31 4 2 Updated Jan 10, 2025
  • wdl-common Public
    PacificBiosciences/wdl-common’s past year of commit activity
    WDL 4 BSD-3-Clause-Clear 6 0 1 Updated Jan 10, 2025
  • paraphase Public

    HiFi-based caller for highly similar paralogous genes

    PacificBiosciences/paraphase’s past year of commit activity
    Python 36 BSD-3-Clause-Clear 7 8 1 Updated Jan 9, 2025
  • HiFi-somatic-WDL Public

    Tumor-normal variant calling workflow using HiFi reads

    PacificBiosciences/HiFi-somatic-WDL’s past year of commit activity
    WDL 13 BSD-3-Clause-Clear 7 0 1 Updated Jan 3, 2025
  • HiFi-16S-workflow Public

    Nextflow pipeline to analyze PacBio HiFi full-length 16S data

    PacificBiosciences/HiFi-16S-workflow’s past year of commit activity
    Nextflow 66 BSD-3-Clause-Clear 18 3 0 Updated Dec 31, 2024

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