bug fixed

PayamDiba · Jun 27, 2020 · bb84519 · bb84519
1 parent f343735
commit bb84519
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Showing 2 changed files with 22 additions and 7 deletions.
diff --git a/SERGIO/gene.py b/SERGIO/gene.py
@@ -25,14 +25,29 @@ def __init__(self, geneID, geneType, binID = -1):
         self.ss_S_ = 0 #This is the steady state concentration of Spliced mRNA
 
     def append_Conc (self, currConc):
-        if currConc < 0:
-            currConc = 0
-        self.Conc.append(currConc)
+        if isinstance(currConc, list):
+            if currConc[0] < 0:
+                self.Conc.append([0])
+            else:
+                self.Conc.append(currConc)
+        else:
+            if currConc < 0:
+                self.Conc.append(0)
+            else:
+                self.Conc.append(currConc)
+
 
     def append_Conc_S (self, currConc):
-        if currConc < 0:
-            currConc = 0
-        self.Conc_S.append(currConc)
+        if isinstance(currConc, list):
+            if currConc[0] < 0:
+                self.Conc_S.append([0])
+            else:
+                self.Conc_S.append(currConc)
+        else:
+            if currConc < 0:
+                self.Conc_S.append(0)
+            else:
+                self.Conc_S.append(currConc)
 
     def append_dConc (self, currdConc):
         self.dConc.append(currdConc)

diff --git a/SERGIO/sergio.py b/SERGIO/sergio.py
@@ -1,5 +1,5 @@
 import numpy as np
-from gene import gene
+from .gene import gene
 from scipy.stats import ttest_rel, ttest_ind, ranksums
 import sys
 import csv