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Updated production_structure.sql file.
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@gsrohde
gsrohde committed May 17, 2017
1 parent 523d4be commit 6508885
Showing 1 changed file with 148 additions and 0 deletions.
148 changes: 148 additions & 0 deletions db/production_structure.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,58 @@ CREATE DOMAIN statnames AS text NOT NULL DEFAULT ''::text
CONSTRAINT statnames_check CHECK ((VALUE = ANY (ARRAY['SD'::text, 'SE'::text, 'MSE'::text, '95%CI'::text, 'LSD'::text, 'MSD'::text, 'HSD'::text, ''::text])));


--
-- Name: check_correct_cultivar(); Type: FUNCTION; Schema: public; Owner: -
--

CREATE FUNCTION check_correct_cultivar() RETURNS trigger
LANGUAGE plpgsql
AS $$
DECLARE
required_cultivar_id bigint;
required_specie_id bigint;
BEGIN
SELECT cultivar_id FROM sites_cultivars WHERE site_id = NEW.site_id INTO required_cultivar_id;
IF (required_cultivar_id IS NOT NULL) THEN
SELECT specie_id FROM cultivars WHERE id = required_cultivar_id INTO required_specie_id;
ELSE
SELECT specie_id FROM cultivars WHERE id = NEW.cultivar_id INTO required_specie_id;
END IF;
IF (required_cultivar_id IS NULL) THEN
IF (NEW.cultivar_id IS NULL) THEN
NULL;
ELSIF (NEW.specie_id IS NULL) THEN
NEW.specie_id := required_specie_id;
ELSIF (NEW.specie_id = required_specie_id) THEN
NULL;
ELSE
RAISE EXCEPTION 'The species id % is not consistent with the cultivar id %.', NEW.specie_id, NEW.cultivar_id;
END IF;
ELSE
IF (NEW.cultivar_id IS NULL) THEN
IF (NEW.specie_id IS NULL) THEN
NEW.cultivar_id := required_cultivar_id;
NEW.specie_id := required_specie_id;
ELSIF (NEW.specie_id = required_specie_id) THEN
NEW.cultivar_id := required_cultivar_id;
ELSE
RAISE EXCEPTION 'The species id % is not consistent with the cultivar id %. It should be %.', NEW.specie_id, required_cultivar_id, required_specie_id;
END IF;
ELSIF (NEW.cultivar_id = required_cultivar_id) THEN
IF (NEW.specie_id IS NULL) THEN
NEW.specie_id := required_specie_id;
ELSIF (NEW.specie_id != required_specie_id) THEN
RAISE EXCEPTION 'The species id % is not consistent with the cultivar id %. It should be %.', NEW.specie_id, NEW.cultivar_id, required_specie_id;
END IF;
ELSE
RAISE EXCEPTION 'The value of cultivar_id (%) is not consistent with the value % specified for site_id %.', NEW.cultivar_id, required_cultivar_id, NEW.site_id;
END IF;
END IF;
RETURN NEW;
END;
$$;


--
-- Name: check_for_references(); Type: FUNCTION; Schema: public; Owner: -
--
Expand Down Expand Up @@ -809,6 +861,26 @@ END;
$$;
--
-- Name: set_correct_cultivar(); Type: FUNCTION; Schema: public; Owner: -
--
CREATE FUNCTION set_correct_cultivar() RETURNS trigger
LANGUAGE plpgsql
AS $$
DECLARE
required_cultivar_id bigint;
BEGIN
IF (EXISTS(SELECT 1 FROM traits WHERE site_id = NEW.site_id AND cultivar_id != NEW.cultivar_id)) THEN
RAISE EXCEPTION 'Some existing traits have cultivar_id values inconsistent with this change.%', '';
ELSE
UPDATE traits SET cultivar_id = NEW.cultivar_id WHERE site_id = NEW.site_id;
END IF;
RETURN NEW;
END;
$$;
--
-- Name: site_or_utc_date(timestamp without time zone, text); Type: FUNCTION; Schema: public; Owner: -
--
Expand Down Expand Up @@ -2795,6 +2867,38 @@ COMMENT ON COLUMN sites.som IS 'Depreciated';
COMMENT ON COLUMN sites.greenhouse IS 'Boolean: indicates if study was conducted in a field (0) or greenhouse, pot, or growth chamber (1)';
--
-- Name: sites_cultivars; Type: TABLE; Schema: public; Owner: -; Tablespace:
--
CREATE TABLE sites_cultivars (
id bigint NOT NULL,
site_id bigint NOT NULL,
cultivar_id bigint NOT NULL,
created_at timestamp(6) without time zone DEFAULT utc_now(),
updated_at timestamp(6) without time zone DEFAULT utc_now()
);
--
-- Name: sites_cultivars_id_seq; Type: SEQUENCE; Schema: public; Owner: -
--
CREATE SEQUENCE sites_cultivars_id_seq
START WITH 1
INCREMENT BY 1
NO MINVALUE
NO MAXVALUE
CACHE 1;
--
-- Name: sites_cultivars_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
--
ALTER SEQUENCE sites_cultivars_id_seq OWNED BY sites_cultivars.id;
--
-- Name: species_id_seq; Type: SEQUENCE; Schema: public; Owner: -
--
Expand Down Expand Up @@ -3912,6 +4016,13 @@ ALTER TABLE ONLY sitegroups ALTER COLUMN id SET DEFAULT nextval('sitegroups_id_s
ALTER TABLE ONLY sitegroups_sites ALTER COLUMN id SET DEFAULT nextval('sitegroups_sites_id_seq'::regclass);
--
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
--
ALTER TABLE ONLY sites_cultivars ALTER COLUMN id SET DEFAULT nextval('sites_cultivars_id_seq'::regclass);
--
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
--
Expand Down Expand Up @@ -4810,6 +4921,13 @@ CREATE UNIQUE INDEX trait_covariate_associations_uniqueness ON trait_covariate_a
CREATE UNIQUE INDEX unique_schema_migrations ON schema_migrations USING btree (version);
--
-- Name: ensure_correct_cultivar_for_site; Type: TRIGGER; Schema: public; Owner: -
--
CREATE TRIGGER ensure_correct_cultivar_for_site BEFORE INSERT OR UPDATE OF site_id, cultivar_id, specie_id ON traits FOR EACH ROW EXECUTE PROCEDURE check_correct_cultivar();
--
-- Name: forbid_dangling_input_references; Type: TRIGGER; Schema: public; Owner: -
--
Expand Down Expand Up @@ -4914,6 +5032,13 @@ COMMENT ON TRIGGER restrict_trait_range ON traits IS 'Trigger function to ensure
A NULL in the min or max column means "no limit".';
--
-- Name: set_correct_cultivar_for_site; Type: TRIGGER; Schema: public; Owner: -
--
CREATE TRIGGER set_correct_cultivar_for_site BEFORE INSERT OR UPDATE ON sites_cultivars FOR EACH ROW EXECUTE PROCEDURE set_correct_cultivar();
--
-- Name: update_citations_sites_timestamp; Type: TRIGGER; Schema: public; Owner: -
--
Expand Down Expand Up @@ -5159,6 +5284,13 @@ CREATE TRIGGER update_runs_timestamp BEFORE UPDATE ON runs FOR EACH ROW EXECUTE
CREATE TRIGGER update_sessions_timestamp BEFORE UPDATE ON sessions FOR EACH ROW EXECUTE PROCEDURE update_timestamp();
--
-- Name: update_sites_cultivars_timestamp; Type: TRIGGER; Schema: public; Owner: -
--
CREATE TRIGGER update_sites_cultivars_timestamp BEFORE UPDATE ON sites_cultivars FOR EACH ROW EXECUTE PROCEDURE update_timestamp();
--
-- Name: update_sites_timestamp; Type: TRIGGER; Schema: public; Owner: -
--
Expand Down Expand Up @@ -5350,6 +5482,14 @@ ALTER TABLE ONLY cultivars_pfts
COMMENT ON CONSTRAINT cultivar_exists ON cultivars_pfts IS 'Ensure the referred-to cultivar exists, block its deletion if it is being used in a pft, and update the reference if the cultivar id number changes.';
--
-- Name: cultivar_exists; Type: FK CONSTRAINT; Schema: public; Owner: -
--
ALTER TABLE ONLY sites_cultivars
ADD CONSTRAINT cultivar_exists FOREIGN KEY (cultivar_id) REFERENCES cultivars(id) ON UPDATE CASCADE;
--
-- Name: fk_citations_sites_citations_1; Type: FK CONSTRAINT; Schema: public; Owner: -
--
Expand Down Expand Up @@ -5972,6 +6112,14 @@ ALTER TABLE ONLY reference_runs
ADD CONSTRAINT reference_runs_model_id_fkey FOREIGN KEY (model_id) REFERENCES models(id) ON UPDATE CASCADE ON DELETE RESTRICT;
--
-- Name: site_exists; Type: FK CONSTRAINT; Schema: public; Owner: -
--
ALTER TABLE ONLY sites_cultivars
ADD CONSTRAINT site_exists FOREIGN KEY (site_id) REFERENCES sites(id) ON UPDATE CASCADE;
--
-- Name: species_exists; Type: FK CONSTRAINT; Schema: public; Owner: -
--
Expand Down

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