v2.15.5 #48
Workflow file for this run
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| name: Upload assets to release | |
| on: | |
| release: | |
| types: [published] | |
| jobs: | |
| release: | |
| name: Upload assets to release | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set appVersion | |
| uses: bhowell2/github-substring-action@v1 | |
| id: appVersion | |
| with: | |
| value: ${{github.ref}} | |
| index_of_str: "refs/tags/v" | |
| - run: echo "Version = ${{steps.appVersion.outputs.substring}}" | |
| - name: Set up JDK | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: temurin | |
| java-version: 17 | |
| cache: gradle | |
| - name: Package app | |
| run: ./gradlew shadowJar --no-daemon | |
| - name: Package preprocessor | |
| run: make scriptPkg | |
| - name: Upload jar to release | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| tag: ${{ github.ref }} | |
| file: build/libs/pharmcat-${{steps.appVersion.outputs.substring}}-all.jar | |
| overwrite: true | |
| - name: Upload preprocessor to release | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| tag: ${{ github.ref }} | |
| file: build/preprocessor.tar.gz | |
| asset_name: pharmcat-preprocessor-${{steps.appVersion.outputs.substring}}.tar.gz | |
| overwrite: true | |
| - name: Upload positions.vcf to release | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| tag: ${{ github.ref }} | |
| file: pharmcat_positions.vcf | |
| asset_name: pharmcat_positions_${{steps.appVersion.outputs.substring}}.vcf | |
| overwrite: true | |
| - name: Upload positions.vcf.bgz to release | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| tag: ${{ github.ref }} | |
| file: pharmcat_positions.vcf.bgz | |
| asset_name: pharmcat_positions_${{steps.appVersion.outputs.substring}}.vcf.bgz | |
| overwrite: true | |
| - name: Upload positions.vcf.bgz.csi to release | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| tag: ${{ github.ref }} | |
| file: pharmcat_positions.vcf.bgz.csi | |
| asset_name: pharmcat_positions_${{steps.appVersion.outputs.substring}}.vcf.bgz.csi | |
| overwrite: true | |
| - name: Upload positions.uniallelic.vcf.bgz to release | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| tag: ${{ github.ref }} | |
| file: pharmcat_positions.uniallelic.vcf.bgz | |
| asset_name: pharmcat_positions_${{steps.appVersion.outputs.substring}}.uniallelic.vcf.bgz | |
| overwrite: true | |
| - name: Upload positions.uniallelic.vcf.bgz.csi to release | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| tag: ${{ github.ref }} | |
| file: pharmcat_positions.uniallelic.vcf.bgz.csi | |
| asset_name: pharmcat_positions_${{steps.appVersion.outputs.substring}}.uniallelic.vcf.bgz.csi | |
| overwrite: true | |
| - name: Send Slack notification on failure | |
| if: failure() | |
| uses: slackapi/slack-github-action@v1 | |
| with: | |
| channel-id: 'dev' | |
| payload: | | |
| { | |
| "attachments": [{ | |
| "color": "#ff0000", | |
| "blocks": [ | |
| { | |
| "type": "section", | |
| "text": { | |
| "type": "mrkdwn", | |
| "text": ":stop: <https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}|FAILED ${{ github.workflow }}!>" | |
| } | |
| }, | |
| { | |
| "type": "section", | |
| "text": { | |
| "type": "mrkdwn", | |
| "text": "Triggered by ${{ github.event_name }} on <${{ github.event.pull_request.html_url || github.event.head_commit.url }}|${{ github.ref_name }}> by ${{ github.actor }}." | |
| } | |
| }, | |
| { | |
| "type": "context", | |
| "elements": [ | |
| { | |
| "type": "mrkdwn", | |
| "text": "Last commit:\n${{ github.event.head_commit.message }}" | |
| } | |
| ] | |
| } | |
| ] | |
| }] | |
| } | |
| env: | |
| SLACK_BOT_TOKEN: ${{ secrets.SLACK_NOTIFICATIONS_BOT_TOKEN }} |