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Fixed version mismatches
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GallVp committed Nov 5, 2024
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2 changes: 1 addition & 1 deletion docs/usage.md
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Expand Up @@ -129,7 +129,7 @@ The data for these examples comes from: [umd.edu](https://obj.umiacs.umd.edu/mar
All the modules have been tested to work on a single machine with 10 CPUs + 32 GBs of memory, except NCBI FCS GX and Kraken2. Their minimum requirements are:

- NCBI FCS GX: 1 CPU + 512 GBs memory
- Kraken2: 1 CPU + 250 GBs memory
- Kraken2: 1 CPU + 256 GBs memory

## Running the pipeline

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2 changes: 1 addition & 1 deletion tests/README.md
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Expand Up @@ -20,7 +20,7 @@ The GitHub [CI action](../.github/workflows/ci.yml) included with the pipeline c

## Testing with a Large Dataset at Plant&Food

Before each release, the functionality of the entire pipeline is tested with a large dataset on the on-prem SLURM-based HPC at The New Zealand Institute of Plant and Food Research.
Before each release, the functionality of the entire pipeline is tested with a large dataset on the on-prem SLURM-based HPC at The New Zealand Institute for Plant and Food Research.

## Testing Merqury Datasets

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2 changes: 1 addition & 1 deletion tests/hicparam/main.nf.test.snap
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"pigz": "2.3.4"
},
"Workflow": {
"plant-food-research-open/assemblyqc": "v2.2.0dev"
"plant-food-research-open/assemblyqc": "v2.2.0"
}
},
"stable paths": [
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2 changes: 1 addition & 1 deletion tests/invalid/main.nf.test.snap
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"pigz": "2.3.4"
},
"Workflow": {
"plant-food-research-open/assemblyqc": "v2.2.0dev"
"plant-food-research-open/assemblyqc": "v2.2.0"
}
},
"stable paths": [
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2 changes: 1 addition & 1 deletion tests/minimal/main.nf.test.snap
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"pigz": "2.3.4"
},
"Workflow": {
"plant-food-research-open/assemblyqc": "v2.2.0dev"
"plant-food-research-open/assemblyqc": "v2.2.0"
}
},
"stable paths": [
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2 changes: 1 addition & 1 deletion tests/noltr/main.nf.test.snap
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"seqkit": "v2.8.0"
},
"Workflow": {
"plant-food-research-open/assemblyqc": "v2.2.0dev"
"plant-food-research-open/assemblyqc": "v2.2.0"
}
},
"stable paths": [
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4 changes: 2 additions & 2 deletions tests/orthofinder/main.nf.test.snap
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Expand Up @@ -41,7 +41,7 @@
"pigz": "2.3.4"
},
"Workflow": {
"plant-food-research-open/assemblyqc": "v2.2.0dev"
"plant-food-research-open/assemblyqc": "v2.2.0"
}
},
"stable paths": [
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},
"timestamp": "2024-11-01T14:11:21.865104"
}
}
}
2 changes: 1 addition & 1 deletion tests/stub/main.nf.test.snap
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"untar": 1.34
},
"Workflow": {
"plant-food-research-open/assemblyqc": "v2.2.0dev"
"plant-food-research-open/assemblyqc": "v2.2.0"
}
},
"stable paths": [
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2 changes: 1 addition & 1 deletion tests/tiny/main.nf.test.snap
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"pigz": "2.3.4"
},
"Workflow": {
"plant-food-research-open/assemblyqc": "v2.2.0dev"
"plant-food-research-open/assemblyqc": "v2.2.0"
}
},
"stable paths": [
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