Merge pull request #11 from Portiloop/milo/refactoring

Merging Milo/refactoring into main

.gitignore

@@ -129,3 +129,5 @@ venv.bak/
 .mypy_cache/
 .dmypy.json
 dmypy.json
+
+config_files.txt

Makefile

@@ -0,0 +1,151 @@
+all: miniforge
+
+# all can be either "vanilla" or "miniforge"
+
+# === AP creation ===
+
+step0.temp:
+	cd ~/portiloop-software && bash create_ap.sh
+	touch step0.temp
+
+# === miniforge pipeline ===
+
+step1.temp: step0.temp
+	echo "--- PORTILOOP V2 INSTALLATION (Miniforge version) ---"
+	sudo apt-get update
+	sudo apt-get install -y python3-matplotlib python3-scipy python3-dev libasound2-dev
+	touch step1.temp
+
+step2.temp: step1.temp
+	echo "Installing Miniforge..."
+	wget https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-aarch64.sh
+	bash Miniforge3-Linux-aarch64.sh -b
+	rm Miniforge3-Linux-aarch64.sh
+	touch step2.temp
+
+step3.temp: step2.temp
+	echo "Creating portiloop virtual environment..."
+	~/miniforge3/bin/conda create -n portiloop python=3.7 -y
+	touch step3.temp
+
+step4.temp: step3.temp
+	echo "Installing latest pycoral and tflite-runtime..."
+	wget https://github.com/google-coral/pycoral/releases/download/v2.0.0/pycoral-2.0.0-cp37-cp37m-linux_aarch64.whl
+	wget https://github.com/google-coral/pycoral/releases/download/v2.0.0/tflite_runtime-2.5.0.post1-cp37-cp37m-linux_aarch64.whl
+	~/miniforge3/envs/portiloop/bin/pip3 install tflite_runtime-2.5.0.post1-cp37-cp37m-linux_aarch64.whl
+	~/miniforge3/envs/portiloop/bin/pip3 install pycoral-2.0.0-cp37-cp37m-linux_aarch64.whl
+	rm tflite_runtime-2.5.0.post1-cp37-cp37m-linux_aarch64.whl
+	rm pycoral-2.0.0-cp37-cp37m-linux_aarch64.whl
+	touch step4.temp
+
+step5.temp: step4.temp
+	echo "Installing the Portiloop software [This may take a while]"
+	cd ~/portiloop-software && sudo apt-get install git-lfs && git lfs pull && ~/miniforge3/envs/portiloop/bin/pip3 install notebook && ~/miniforge3/envs/portiloop/bin/pip3 install -e .
+	echo "Activating the widgets for the jupyter notebook..."
+	~/miniforge3/envs/portiloop/bin/jupyter nbextension enable --py widgetsnbextension
+	echo "Creating workspace directory..."
+	cd ~ && mkdir workspace && mkdir workspace/edf_recording
+	echo "Copying files..."
+	cd ~/portiloop-software/portiloop/setup_files && sudo cp asound.conf /etc/asound.conf
+	cd ~/portiloop-software/portiloop/setup_files && sudo cp miniforge_jupyter.service /etc/systemd/system/jupyter.service
+	touch step5.temp
+
+step6.temp: step5.temp
+	echo "Reloading systemctl daemon..."
+	sudo systemctl daemon-reload
+	echo "Enabling jupyter service..."
+	sudo systemctl enable jupyter.service
+	touch step6.temp
+
+step7.temp: step6.temp
+	echo "Playing test sound to update ALSA:"
+	echo "NOTE: This step may fail, just call make again when it does."
+	cd ~/portiloop-software/portiloop/sounds && aplay -Dplug:softvol stimulus.wav
+	touch step7.temp
+
+miniforge: step7.temp
+	echo "Launching jupyter notebook password manager..."
+	~/miniforge3/envs/portiloop/bin/jupyter notebook password
+	rm *.temp
+	echo "All done! Please reboot the device."
+
+
+# === vanilla pipeline ===
+
+vstep1.temp: step0.temp
+	echo "--- PORTILOOP V2 INSTALLATION (Vanilla version) ---"
+	echo "The script will now update your system."
+	echo "Preparing apt..."
+	export LC_ALL="en_US.UTF-8"
+	sudo apt remove -y reportbug python3-reportbug
+	gpg --keyserver keyserver.ubuntu.com --recv-keys B53DC80D13EDEF05
+	gpg --export --armor B53DC80D13EDEF05 | sudo apt-key add -
+	echo "Updating apt..."
+	sudo apt-get --allow-releaseinfo-change-suite update
+	touch vstep1.temp
+
+vstep2.temp: vstep1.temp
+	echo "Upgrading pip3..."
+	# sudo /usr/bin/python3 -m pip install --upgrade pip
+	pip3 install --upgrade pip --user
+	echo "pip3 is now at the following location:"
+	which pip3
+	@if [ $$(which pip3) = "/home/mendel/.local/bin/pip3" ]; then \
+		echo "Installed pip3 path is correct"; \
+	else \
+		echo "Installed pip3 path is incorrect, will now exit with an error."; \
+		echo "This is fine, please reboot the device and execute make again."; \
+		exit 1; \
+	fi
+	touch vstep2.temp
+
+vstep3.temp: vstep2.temp
+	echo "Installing dependencies..."
+	sudo apt-get install -y python3-matplotlib python3-scipy python3-dev libasound2-dev jupyter-notebook jupyter
+	sudo apt-get install -y jupyter-nbextension-jupyter-js-widgets
+	touch vstep3.temp
+
+vstep4.temp: vstep3.temp
+	echo "Installing latest pycoral and tflite-runtime..."
+	wget https://github.com/google-coral/pycoral/releases/download/v2.0.0/pycoral-2.0.0-cp37-cp37m-linux_aarch64.whl
+	wget https://github.com/google-coral/pycoral/releases/download/v2.0.0/tflite_runtime-2.5.0.post1-cp37-cp37m-linux_aarch64.whl
+	pip3 install tflite_runtime-2.5.0.post1-cp37-cp37m-linux_aarch64.whl --user
+	pip3 install pycoral-2.0.0-cp37-cp37m-linux_aarch64.whl --user
+	rm tflite_runtime-2.5.0.post1-cp37-cp37m-linux_aarch64.whl
+	rm pycoral-2.0.0-cp37-cp37m-linux_aarch64.whl
+	touch vstep4.temp
+
+vstep5.temp: vstep4.temp
+	echo "Installing the Portiloop software [This may take a while]"
+	cd ~/portiloop-software && sudo apt-get install git-lfs && git lfs pull && pip3 install -e . --user
+	echo "Activating the widgets for the jupyter notebook..."
+	jupyter nbextension enable --py widgetsnbextension
+	echo "Creating workspace directory..."
+	cd ~ && mkdir workspace && mkdir workspace/edf_recording
+	echo "Copying files..."
+	cd ~/portiloop-software/portiloop/setup_files && sudo cp asound.conf /etc/asound.conf
+	cd ~/portiloop-software/portiloop/setup_files && sudo cp jupyter.service /etc/systemd/system/jupyter.service
+	touch vstep5.temp
+
+vstep6.temp: vstep5.temp
+	echo "Reloading systemctl daemon..."
+	sudo systemctl daemon-reload
+	echo "Enabling jupyter service..."
+	sudo systemctl enable jupyter.service
+	touch vstep6.temp
+
+vstep7.temp: vstep6.temp
+	echo "Playing test sound to update ALSA:"
+	echo "NOTE: This step may fail, just call make again when it does."
+	cd ~/portiloop-software/portiloop/sounds && aplay -Dplug:softvol stimulus.wav
+	touch vstep7.temp
+
+vanilla: vstep7.temp
+	echo "Launching jupyter notebook password manager..."
+	jupyter notebook password
+	rm *.temp
+	echo "All done! Please reboot the device."
+
+
+clean:
+	rm *.temp