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AddSuffixToDuplicatedRows.sh
AddSuffixToDuplicatedRows.sh
 
 
BarcodeProcessingAndTrimming.sh
BarcodeProcessingAndTrimming.sh
 
 
ClickerAFK.py
ClickerAFK.py
 
 
ClusterReads.sh
ClusterReads.sh
 
 
ClusterReadsSubseq.sh
ClusterReadsSubseq.sh
 
 
CountsToTPM.py
CountsToTPM.py
 
 
CreateUniqGwasOutput.R
CreateUniqGwasOutput.R
 
 
DeintervealFastqFiles.sh
DeintervealFastqFiles.sh
 
 
DiskMemoryDetectorSlackBot.py
DiskMemoryDetectorSlackBot.py
 
 
DownsampleFastq.sh
DownsampleFastq.sh
 
 
EMMAX.R
EMMAX.R
 
 
EditGeneList.py
EditGeneList.py
 
 
English_words.py
English_words.py
 
 
ExtractGwasClinvarINFO.py
ExtractGwasClinvarINFO.py
 
 
Extract_Domains_from_Proteins.py
Extract_Domains_from_Proteins.py
 
 
FPKMtoTPM.py
FPKMtoTPM.py
 
 
FaPairwiseDist.R
FaPairwiseDist.R
 
 
FastaReplaceSeqCharacter.sh
FastaReplaceSeqCharacter.sh
 
 
FastaToLogo.R
FastaToLogo.R
 
 
FilterFaByListOfPartNames.py
FilterFaByListOfPartNames.py
 
 
FilterRows.py
FilterRows.py
 
 
GAPIT.R
GAPIT.R
 
 
GAPIT3.R
GAPIT3.R
 
 
HeatMapFromPeaksAndBW.sh
HeatMapFromPeaksAndBW.sh
 
 
IBS_SNPrelate.R
IBS_SNPrelate.R
 
 
Impute.R
Impute.R
 
 
InterVarAnnotationParser.py
InterVarAnnotationParser.py
 
 
IpynbToPdf.sh
IpynbToPdf.sh
 
 
KinasePseudoKinase.py
KinasePseudoKinase.py
 
 
LDhatIntervalToGraph.py
LDhatIntervalToGraph.py
 
 
LFMM.R
LFMM.R
 
 
LFMM_onefile.R
LFMM_onefile.R
 
 
MakeDiploidSimpleFromVCF.py
MakeDiploidSimpleFromVCF.py
 
 
MakePrePro_parallel.sh
MakePrePro_parallel.sh
 
 
MotifFindingInReads.sh
MotifFindingInReads.sh
 
 
MultiLineFastaToSingleLine.sh
MultiLineFastaToSingleLine.sh
 
 
NCBI_gff_fill_chromosome_names.py
NCBI_gff_fill_chromosome_names.py
 
 
PCA_SNPrelate.R
PCA_SNPrelate.R
 
 
ParseHMM3.py
ParseHMM3.py
 
 
Parse_Tender_xls.py
Parse_Tender_xls.py
 
 
PeakToSeq.sh
PeakToSeq.sh
 
 
Plot_manhat.R
Plot_manhat.R
 
 
Plot_manhat_CMplot.R
Plot_manhat_CMplot.R
 
 
Plot_manhat_CircularDouble_CMplot.R
Plot_manhat_CircularDouble_CMplot.R
 
 
Plot_manhat_locuszoom.R
Plot_manhat_locuszoom.R
 
 
PoolSeqFastqToVCF.sh
PoolSeqFastqToVCF.sh
 
 
PopGenStats.R
PopGenStats.R
 
 
PrePro_RepEx.sh
PrePro_RepEx.sh
 
 
PreprocAndCRISP.sh
PreprocAndCRISP.sh
 
 
PreprocVCF.sh
PreprocVCF.sh
 
 
ProgrSamAligning.sh
ProgrSamAligning.sh
 
 
RDA.R
RDA.R
 
 
README.md
README.md
 
 
RenameTrepDBtoTransposomeFormat.py
RenameTrepDBtoTransposomeFormat.py
 
 
Rename_basename_locus_tag_GBK.py
Rename_basename_locus_tag_GBK.py
 
 
Rename_organism_gbk.py
Rename_organism_gbk.py
 
 
RepExFromFa.sh
RepExFromFa.sh
 
 
RepExFromPEfq.sh
RepExFromPEfq.sh
 
 
RepExFromPEfqCustomDB.sh
RepExFromPEfqCustomDB.sh
 
 
RepExFromPEfq_FROM_sampled.sh
RepExFromPEfq_FROM_sampled.sh
 
 
Run_LDBlockShow.sh
Run_LDBlockShow.sh
 
 
Run_fastp_paired.sh
Run_fastp_paired.sh
 
 
SNMF.R
SNMF.R
 
 
SamToBam.sh
SamToBam.sh
 
 
SnpEffAnnotationClinVarGwasDbnsfp.sh
SnpEffAnnotationClinVarGwasDbnsfp.sh
 
 
SummariseRepExClusterOutput.py
SummariseRepExClusterOutput.py
 
 
SummariseRepExSuperClusterOutput.py
SummariseRepExSuperClusterOutput.py
 
 
TajimaCharacteristicPop.R
TajimaCharacteristicPop.R
 
 
TransferFromHive.sh
TransferFromHive.sh
 
 
TransferFromMigal.sh
TransferFromMigal.sh
 
 
TransferToHive.sh
TransferToHive.sh
 
 
TransferToMigal.sh
TransferToMigal.sh
 
 
TransposomeFamilyAnalyse.py
TransposomeFamilyAnalyse.py
 
 
TrimSampleSE.sh
TrimSampleSE.sh
 
 
WTKgenes_kinase.fa
WTKgenes_kinase.fa
 
 
cbind_eachN_column.sh
cbind_eachN_column.sh
 
 
download_ncbi_GSE.sh
download_ncbi_GSE.sh
 
 
download_ncbi_GSM.sh
download_ncbi_GSM.sh
 
 
download_parallel.sh
download_parallel.sh
 
 
extract_sig_SNPs.R
extract_sig_SNPs.R
 
 
find_genes.R
find_genes.R
 
 
find_overlap_SNP.R
find_overlap_SNP.R
 
 
lfmm2vcf.R
lfmm2vcf.R
 
 
miami_plot.R
miami_plot.R
 
 
miami_plot_overlap3.R
miami_plot_overlap3.R
 
 
miami_plot_overlap3_freey.R
miami_plot_overlap3_freey.R
 
 
ped2csv.sh
ped2csv.sh
 
 
processVcf.sh
processVcf.sh
 
 
prune.sh
prune.sh
 
 
prune_only.sh
prune_only.sh
 
 
rbind.sh
rbind.sh
 
 
run_SNMF_and_Impute.sh
run_SNMF_and_Impute.sh
 
 
sample_vcf.sh
sample_vcf.sh
 
 
se
se
 
 
sortH.sh
sortH.sh
 
 
split_by_columns.sh
split_by_columns.sh
 
 
thinning.sh
thinning.sh
 
 
tped2lfmm.R
tped2lfmm.R
 
 
transposome_Run.sh
transposome_Run.sh
 
 
vcf2lfmm.R
vcf2lfmm.R
 
 

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Bioscripts

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