auto updates (#339)

Signed-off-by: monai-bot <[email protected]>

Signed-off-by: monai-bot <[email protected]>

prostate-mri-lesion-seg/LICENSE

@@ -1,54 +1,54 @@
-Prostate-MRI_Lesion_Detection, v2.0 (Release date: August 2, 2023)
-•	DEFINITIONS: AUTHOR(S) NVIDIA Corp. and National Cancer Institute, NIH
-
-•	PROVIDER: the National Cancer Institute (NCI), a participating institute of the
-National Institutes of Health (NIH), and an agency of the United States Government.
-
-•	SOFTWARE: the machine readable, binary, object code form,
-and the related documentation for the modules of the Prostate-MRI_Lesion_Detection, v2.0
-software package, which is a collection of operators which accept (T2, ADC, and High
-b-value DICOM images) and produce prostate organ and lesion segmentation files
-
-•	RECIPIENT: the party that downloads the software.
-
-By downloading or otherwise receiving the SOFTWARE, RECIPIENT may
-use and/or redistribute the SOFTWARE, with or without modification,
-subject to RECIPIENT’s agreement to the following terms:
-
-1. THE SOFTWARE SHALL NOT BE USED IN THE TREATMENT OR DIAGNOSIS
-OF HUMAN SUBJECTS.  RECIPIENT is responsible for
-compliance with all laws and regulations applicable to the use
-of the SOFTWARE.
-
-2. THE SOFTWARE is distributed for NON-COMMERCIAL RESEARCH PURPOSES ONLY. RECIPIENT is
-responsible for appropriate-use compliance.
-
-3.	RECIPIENT agrees to acknowledge PROVIDER’s contribution and
-the name of the author of the SOFTWARE in all written publications
-containing any data or information regarding or resulting from use
-of the SOFTWARE.
-
-4.	THE SOFTWARE IS PROVIDED "AS IS" AND ANY EXPRESS OR IMPLIED
-WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
-OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT
-ARE DISCLAIMED. IN NO EVENT SHALL THE PROVIDER OR THE INDIVIDUAL DEVELOPERS
-BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
-CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
-SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
-INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
-CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
-ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
-THE POSSIBILITY OF SUCH DAMAGE.
-
-5.	RECIPIENT agrees not to use any trademarks, service marks, trade names,
-logos or product names of NVIDIA, NCI or NIH to endorse or promote products derived
-from the SOFTWARE without specific, prior and written permission.
-
-6.	For sake of clarity, and not by way of limitation, RECIPIENT may add its
-own copyright statement to its modifications or derivative works of the SOFTWARE
-and may provide additional or different license terms and conditions in its
-sublicenses of modifications or derivative works of the SOFTWARE provided that
-RECIPIENT’s use, reproduction, and distribution of the SOFTWARE otherwise complies
-with the conditions stated in this Agreement. Whenever Recipient distributes or
-redistributes the SOFTWARE, a copy of this Agreement must be included with
-each copy of the SOFTWARE.
+Prostate-MRI_Lesion_Detection, v2.0 (Release date: August 2, 2023)
+•	DEFINITIONS: AUTHOR(S) NVIDIA Corp. and National Cancer Institute, NIH
+
+•	PROVIDER: the National Cancer Institute (NCI), a participating institute of the
+National Institutes of Health (NIH), and an agency of the United States Government.
+
+•	SOFTWARE: the machine readable, binary, object code form,
+and the related documentation for the modules of the Prostate-MRI_Lesion_Detection, v2.0
+software package, which is a collection of operators which accept (T2, ADC, and High
+b-value DICOM images) and produce prostate organ and lesion segmentation files
+
+•	RECIPIENT: the party that downloads the software.
+
+By downloading or otherwise receiving the SOFTWARE, RECIPIENT may
+use and/or redistribute the SOFTWARE, with or without modification,
+subject to RECIPIENT’s agreement to the following terms:
+
+1. THE SOFTWARE SHALL NOT BE USED IN THE TREATMENT OR DIAGNOSIS
+OF HUMAN SUBJECTS.  RECIPIENT is responsible for
+compliance with all laws and regulations applicable to the use
+of the SOFTWARE.
+
+2. THE SOFTWARE is distributed for NON-COMMERCIAL RESEARCH PURPOSES ONLY. RECIPIENT is
+responsible for appropriate-use compliance.
+
+3.	RECIPIENT agrees to acknowledge PROVIDER’s contribution and
+the name of the author of the SOFTWARE in all written publications
+containing any data or information regarding or resulting from use
+of the SOFTWARE.
+
+4.	THE SOFTWARE IS PROVIDED "AS IS" AND ANY EXPRESS OR IMPLIED
+WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT
+ARE DISCLAIMED. IN NO EVENT SHALL THE PROVIDER OR THE INDIVIDUAL DEVELOPERS
+BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
+THE POSSIBILITY OF SUCH DAMAGE.
+
+5.	RECIPIENT agrees not to use any trademarks, service marks, trade names,
+logos or product names of NVIDIA, NCI or NIH to endorse or promote products derived
+from the SOFTWARE without specific, prior and written permission.
+
+6.	For sake of clarity, and not by way of limitation, RECIPIENT may add its
+own copyright statement to its modifications or derivative works of the SOFTWARE
+and may provide additional or different license terms and conditions in its
+sublicenses of modifications or derivative works of the SOFTWARE provided that
+RECIPIENT’s use, reproduction, and distribution of the SOFTWARE otherwise complies
+with the conditions stated in this Agreement. Whenever Recipient distributes or
+redistributes the SOFTWARE, a copy of this Agreement must be included with
+each copy of the SOFTWARE.

prostate-mri-lesion-seg/prostate_mri_lesion_seg_app/custom_lesion_seg_operator.py

@@ -231,7 +231,6 @@ class CustomProstateLesionSegOperator(Operator):
     """Performs Prostate Lesion segmentation with a 3D image converted from a mp-DICOM MRI series."""
 
     def __init__(self, model_name: Optional[str] = "", model_path: Optional[str] = ""):
-
         self.logger = logging.getLogger("{}.{}".format(__name__, type(self).__name__))
         super().__init__()
 
@@ -346,9 +345,7 @@ def compute(self, op_input: InputContext, op_output: OutputContext, context: Exe
 
         # Convert to Image and transpose back to DHW
         lesion_mask = self.merge_volumes(output_path=output_path, data=data, tags=tags)
-        lesion_mask = Image(
-            data=lesion_mask.T, metadata=image1.metadata()
-        )
+        lesion_mask = Image(data=lesion_mask.T, metadata=image1.metadata())
 
         op_output.set(lesion_mask, "seg_image")