Change default Koina URL (#3233)

* changed default Koina URL (requested by Koina dev) * relaxed Koina test RT and intensity epsilon to 1e-2 (m/z epsilon is still tight)
ProteoWizard · Nov 25, 2024 · b92fa3a · b92fa3a
1 parent 2a391a3
commit b92fa3a
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/pwiz_tools/Skyline/Model/Koina/Config/KoinaConfig_development.xml b/pwiz_tools/Skyline/Model/Koina/Config/KoinaConfig_development.xml
@@ -1,4 +1,4 @@
 <?xml version="1.0"?>
 <KoinaConfig xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
-  <Server>koina.proteomicsdb.org:443</Server>
-</KoinaConfig>
+  <Server>koina.wilhelmlab.org:443</Server>
+</KoinaConfig>
diff --git a/pwiz_tools/Skyline/TestConnected/KoinaBuildLibraryFromCsvTest.cs b/pwiz_tools/Skyline/TestConnected/KoinaBuildLibraryFromCsvTest.cs
@@ -264,7 +264,7 @@ void comparePredictionResultsToFile(string intensityModel, string rtModel, bool
                             var expected = predictionTests.First(t => t.PeptideModSeq == key.ModifiedSequence);
                             Assert.AreEqual(expected.PrecursorMz, precursorMz, 1e-8, $"{testTag}: PrecursorMz not equal");
                             Assert.AreEqual(expected.PrecursorCharge, key.Charge, $"{testTag}: PrecursorCharge not equal");
-                            Assert.AreEqual(expected.RetentionTime, spectrum.RetentionTime.Value, 1e-5, $"{testTag}: RetentionTime not equal");
+                            Assert.AreEqual(expected.RetentionTime, spectrum.RetentionTime.Value, 1e-2, $"{testTag}: RetentionTime not equal");
 
                             if (!comparePeaks)
                                 continue;
@@ -276,7 +276,7 @@ void comparePredictionResultsToFile(string intensityModel, string rtModel, bool
                                 var expectedPeak = expected.Peaks[i];
                                 var actualPeak = actualPeaks[i];
                                 Assert.AreEqual(expectedPeak.Mz, actualPeak.Mz, 1e-5, $"{testTag}: peak[{i}].Mz not equal");
-                                Assert.AreEqual(expectedPeak.Intensity, actualPeak.Intensity, 1e-5, $"{testTag}: peak[{i}].Intensity not equal");
+                                Assert.AreEqual(expectedPeak.Intensity, actualPeak.Intensity, 1e-2, $"{testTag}: peak[{i}].Intensity not equal");
                             }
                         }
                     }