Print total number of reads at the end

src/buttery_eel.py

@@ -25,9 +25,9 @@
 from .basecaller import start_guppy_server_and_client, basecaller_proc
 
 # region constants
-total_reads = 0
-div = 50
-skipped = 0
+# total_reads = 0
+# div = 50
+# skipped = 0
 
 # How we get data out of the model files if they are not provided by the metadata output
 

src/writer.py

@@ -209,6 +209,8 @@ def write_worker(args, q, files, SAM_OUT):
         for fffile in bc_files:
             bc_files[fffile].close()
 
+    print("Total reads: {}".format(total_reads))
+
     if args.profile:
         pr.disable()
         s = io.StringIO()