buttery-eel v0.6.0

What's Changed

• RNA fixes and u2t conversion by @Psy-Fer in #61
• thread model doc update
• test updates and fixes for new test machine

Full Changelog: v0.5.1...v0.6.0

buttery-eel v0.5.1

What's Changed

• add dot try on barcode summary by @Psy-Fer in #49

Full Changelog: v0.5.0...v0.5.1

buttery-eel v0.5.0

What's Changed

• 7.4.12 dorado for v0.5.0 buttery-eel by @Psy-Fer in #47
• Added more SAM tags
• Breaking API changes accounted for - see README
• Prints total reads basecalled at the end
• Skip queue introduced and will write a skip file if skip reads are detected
• macOS changes to the queue library so it works
• read_splitting on by default for ont lib >=7.4.12

Full Changelog: v0.4.3...v0.5.0

Buttery-eel v0.4.3

What's Changed

Fixed demux parent/read ID issue
major code restructure and compatibility with lastest dorado server lib name change: ont-pybasecall-client-lib
prep for Duplex calling, but currently unavailable due to bugs/missing methods in ONT library.

• Lib change and prep for duplex by @Psy-Fer in #39

Full Changelog: v0.4.2...v0.4.3

buttery-eel v0.4.2

What's Changed

• cut off params update by @hasindu2008 in #24
• update dev from main by @Psy-Fer in #25
• Fix for old guppy API and mod calling newline bug by @Psy-Fer in #27

Full Changelog: v0.4.1...v0.4.2

buttery-eel v0.4.1

What's Changed

• pulling main to dev for fixing dorado by @Psy-Fer in #22
• Fix dorado calls by @Psy-Fer in #23
• default basecaller updated to dorado-server 7.1.4

This release fixes the problems with dorado reads not matching the output from the vanilla dorado-server.
Please use this release if you are going to use dorado server

Full Changelog: v0.4.0...v0.4.1

buttery-eel v0.4.0

What's Changed

• Dev by @Psy-Fer in #20

Barcode demultiplexing
Dorado compatibility
Updated documentation
Update format specs
Extensive testing

Feature complete basecaller for guppy v6.5.7
Tested with dorado server v7.1.4 (with differing results problem)

Full Changelog: v0.3.3...v0.4.0

buttery-eel v0.3.3

What's Changed

• Multiproc by @Psy-Fer in #19

Fix read_id in read_splitting not being written correctly to fastq

Full Changelog: v0.2.4...v0.3.3

buttery-eel v0.2.4

last release of the single proc version in the 0.2.* range

What's Changed

• some basic tests by @hasindu2008 in #6
• update dev from singleproc main by @Psy-Fer in #17
• dev by @Psy-Fer in #18

New Contributors

• @hasindu2008 made their first contribution in #6

Full Changelog: v0.2.2...v0.2.4

buttery-eel v0.2.2

This release incorporated the changes in the non-release version of v0.2.1 and fixes the parent id format

• Added adapter trimming
• added some extra sam tags ts:i: and ns:i:
• fixed parent id, removing @ that was added

still have not moved single proc over to single proc branch.