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only select columns we want in ltc raw data #947

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merged 2 commits into from
May 3, 2024
Merged

only select columns we want in ltc raw data #947

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6baad29
only select columns we want in ltc raw data
lizihao-anu Apr 30, 2024
211c8a7
[check-spelling] Update metadata
lizihao-anu Apr 30, 2024
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11 changes: 11 additions & 0 deletions .github/actions/spelling/expect.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -7,10 +7,13 @@ adtf
arrivalmode
arth
atlassian
atrialfib
attendcat
aut
bedday
BFO
birthtime
bloodbfo
bodyloc
boxi
callr
Expand All @@ -22,6 +25,8 @@ cattend
ccyy
cdn
cennum
CEREBROVASC
chd
chp
chpstart
cij
Expand All @@ -33,13 +38,15 @@ codecov
comhairle
commhosp
congen
copd
costincdnas
costmonthnum
costsfy
covr
cph
createslf
customise
cvd
dataframe
datamart
datazone
Expand Down Expand Up @@ -67,6 +74,7 @@ dplyr
dsn
dtplyr
dvprod
endomet
envir
fcase
feb
Expand Down Expand Up @@ -94,6 +102,7 @@ hbtreatcode
hbtreatname
hci
hcp
hefailure
hhg
hjust
hms
Expand Down Expand Up @@ -154,6 +163,7 @@ openxlsx
orcid
outfile
pandoc
parkinsons
patflow
pattype
pcec
Expand Down Expand Up @@ -184,6 +194,7 @@ readr
readxl
reasonwait
recid
refailure
reflectoring
refsource
renviron
Expand Down
2 changes: 1 addition & 1 deletion R/read_lookup_ltc.R
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Expand Up @@ -34,7 +34,7 @@ read_lookup_ltc <- function(file_path = get_it_ltc_path()) {
)
) %>%
# Rename variables
dplyr::rename(
dplyr::select(
chi = "PATIENT_UPI [C]",
postcode = "PATIENT_POSTCODE [C]",
arth_date = "ARTHRITIS_DIAG_DATE",
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