Public-Health-Scotland · lizihao-anu · Jun 11, 2024 · Jan 16, 2024 · Jan 16, 2024 · Jan 16, 2024
diff --git a/.github/actions/spelling/allow.txt b/.github/actions/spelling/allow.txt
@@ -9,3 +9,4 @@ Moohan
 Scougal
 Tayside
 Zihao
+ubuntu
diff --git a/.github/actions/spelling/excludes.txt b/.github/actions/spelling/excludes.txt
@@ -43,6 +43,7 @@
 \.psd$
 \.pyc$
 \.s$
+\.sps$
 \.svgz?$
 \.tar$
 \.tiff?$
@@ -57,4 +58,5 @@
 ^\Q.github/workflows/spelling.yml\E$
 ^\Q/tmp/check-spelling/Public-Health-Scotland/source-linkage-files/commits/f13483ca341940e8549dc23c930da2f23dd0ac43.message\E$
 ^\Q/tmp/check-spelling/Public-Health-Scotland/source-linkage-files/pull-request/613/summary.txt\E$
+^\Qinst/WORDLIST\E$
 ignore$
diff --git a/.github/actions/spelling/expect.txt b/.github/actions/spelling/expect.txt
@@ -1,17 +1,24 @@
+ACa
 Accom
+Admissio
 admloc
 admtype
 ADPE
 adtf
+alstr
 arrivalmode
 arth
 atlassian
+atrialfib
 attendcat
 aut
 bedday
+BFO
 birthtime
+bloodbfo
 bodyloc
 boxi
+CAK
 callr
 Canx
 carehome
@@ -21,24 +28,29 @@
 CCYY
 cdn
 cennum
+CEREBROVASC
+CHC
+chd
 chp
 chpstart
 cij
 Classificat
-cls
 cmh
 CNWs
 codecov
 Comhairle
 commhosp
 congen
-costincdnas
+copd
+costinc
 costmonthnum
 costsfy
 covr
 cph
+CPN
 createslf
 customise
+cvd
 dataframe
 datamart
 datazone
@@ -49,41 +61,58 @@
 daycase
 dbconnect
 dbplyr
+deathdate
 deathdiag
 demog
+dependant
 devhints
-dfc
 Diagramme
 disch
 dischloc
 dischto
+discondition
 disdest
+DMe
 dminutes
 dna
 dontrun
+dotdash
 downup
 dplyr
+Drugsand
 dsn
 dtplyr
+Dunkeld
 dvprod
+endomet
 envir
+eol
 fcase
 feb
+Fhelper
 fifelse
 fileext
 Finalise
+fnc
+Fraility
 fst
 ftm
+furrr
 fyear
 fyyear
 geogs
 ggplot
+GIC
 github
+GLS
 gls
+glsrecord
 gms
 GPOo
+gpooh
 gpprac
 gss
+gtsave
 hbnames
 hbp
 hbpraccode
@@ -92,76 +121,99 @@
 hbtreatname
 hci
 HCP
+hefailure
 hhg
+hiw
 hjust
 hms
 homecare
 homev
 hri
+HSCDIIP
 hscdiip
 hscp
 hscpnames
+htmltools
 htmlwidgets
+httr
 IDPC
-infyyear
+img
+improvementservice
+incdn
+incdnas
+integerish
 intzone
 ipdc
+isdscotland
 issuenumber
-itle
-iwalk
 jaccard
 jan
+javascript
 jennifer
 jul
+JXz
 keydate
 keyring
 keytime
-keytimex
 kis
-lazydt
+knitr
 lcap
 LCHO
 lgl
+linetype
 lintr
 los
 ltc
+ltd
 lubridate
 magrittr
 markdownguide
 Matern
 Mcbride
 mcmahon
+microsoft
+MIU
 MMMYY
-MONTHFLAG
+momths
+monthflag
 mpat
+multiarch
 multiday
 multisession
 multistaff
+na
 NAs
+netlify
 newcons
 nhs
 nhshosp
+noptions
+noreply
 nrs
 nsu
+nwtgck
 odbc
 oldtadm
 opendata
-openxl
 openxlsx
 ORCID
-outfile
+overcounting
 pandoc
+parkinsons
 patflow
 pattype
 PCEC
+PERTH
+PHIBCS
 phs
 phsmethods
 phsopendata
+Physicaland
 pkgdown
 placeinc
-plics
-PMS
+PLICS
 popluation
+Posix
 postcodes
 PPAs
 prac
@@ -170,31 +222,39 @@
 purrr
 quickstart
 rankdir
-Rbuildignore
 rcmdcheck
-RDD
-rds
+rdd
+rdname
 reabl
 reablement
 readcode
 readr
 readxl
 reasonwait
 recid
+refailure
 reflectoring
 refsource
+reftype
+relaint
 renviron
+returnsthe
 rlang
 rmarkdown
+Rnw
+ROBERM
 roxygen
+roxygenise
+Roxygenize
 Rprofile
 Rscript
 rspm
 rstudio
 rstudioapi
-Rtype
+sco
 scoial
 scotp
+SCTASK
 SDcols
 seealso
 selfharm
@@ -210,36 +270,41 @@
 smr
 SMRA
 smrtype
+sourcedev
 sparra
 spd
+SPSS
 spss
 stadm
 starwars
 stefanzweifel
+stopwords
 stringdist
 stringr
 submis
+sysmis
+tac
 tadm
 tarchetypes
-tbl
 telecare
 testthat
 thom
 tibble
 tidyr
 tidyselect
-TODOs
+tidyverse
+totalnodncontacts
 uid
 ungroup
-Unicode
+unrecognised
 updown
 upi
-vline
+URx
+usethis
 workflows
 xintercept
 xlsx
 yearstay
-yml
 YYYYQX
 zihao
 zsav

diff --git a/.github/actions/spelling/patterns.txt b/.github/actions/spelling/patterns.txt
@@ -32,3 +32,8 @@
 
 # uuid:
 \b[0-9a-fA-F]{8}-(?:[0-9a-fA-F]{4}-){3}[0-9a-fA-F]{12}\b
+
+# Automatically suggested patterns
+# hit-count: 27 file-count: 17
+# version suffix <word>v#
+(?:(?<=[A-Z]{2})V|(?<=[a-z]{2}|[A-Z]{2})v)\d+(?:\b|(?=[a-zA-Z_]))
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -17,7 +17,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        r_version: ['3.6', '4.0.2', '4.1.2', 'release']
+        r_version: ['4.0.2', '4.1.2', 'release']
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

diff --git a/.github/workflows/spelling.yml b/.github/workflows/spelling.yml
@@ -72,13 +72,13 @@ jobs:
       with:
         suppress_push_for_open_pull_request: 1
         checkout: true
-        check_file_names: 1
+        check_file_names: 0
         spell_check_this: check-spelling/spell-check-this@prerelease
         post_comment: 0
         use_magic_file: 1
         experimental_apply_changes_via_bot: 1
         use_sarif: 0
-        only_check_changed_files: 1
+        only_check_changed_files: 0
         extra_dictionary_limit: 10
         extra_dictionaries:
            cspell:r/src/r.txt
-Original file line number
+Diff line change
@@ Expand Up / @@ -9,3 +9,4 @@ Moohan @@
     Scougal
     Tayside
     Zihao
+    ubuntu