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@QuackenbushLab

QuackenbushLab

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  1. phoenix phoenix Public

    PHOENIX: a tool to infer biologically informed NeuralODEs describing genome-wide regulatory dynamics

    Python 14 5

  2. yarn yarn Public

    YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization

    R 13 2

  3. FENRIR FENRIR Public

    RNA-seq pipeline to detect viral reads

    Shell 7 2

  4. pypanda pypanda Public

    Python implementation of PANDA and LIONESS

    Python 6 8

  5. grand grand Public

    GRAND database of gene regulatory networks.

    JavaScript 5 2

  6. pandaR pandaR Public

    This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/pandaR.html Bug Reports: https://support.bioconductor.org/p/new/pos…

    R 4 2

Repositories

Showing 10 of 19 repositories
  • grand Public

    GRAND database of gene regulatory networks.

    QuackenbushLab/grand’s past year of commit activity
    JavaScript 5 2 3 0 Updated Dec 19, 2024
  • tcga-data-supplement Public

    supplementary notebooks and configuration files for the tcga-data-manuscript

    QuackenbushLab/tcga-data-supplement’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 26, 2024
  • tcga-data-nf Public

    Workflow to download and prepare TCGA data

    QuackenbushLab/tcga-data-nf’s past year of commit activity
    Nextflow 2 GPL-3.0 0 2 0 Updated Nov 26, 2024
  • NetworkDataCompanion Public

    An R library of utilities for performing analyses on TCGA and GTEx data using the Network Zoo

    QuackenbushLab/NetworkDataCompanion’s past year of commit activity
    HTML 4 GPL-3.0 0 7 0 Updated Nov 13, 2024
  • cobra-experiments Public

    Experiments for the paper "Higher-order correction of persistent batch effects in correlation networks".

    QuackenbushLab/cobra-experiments’s past year of commit activity
    R 4 MIT 0 1 0 Updated Nov 12, 2024
  • QuackenbushLab.github.io Public

    Landing page of the network science lab at Harvard Biostats

    QuackenbushLab/QuackenbushLab.github.io’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Oct 30, 2024
  • LOY_lung_cancer Public

    Companion repository for our study on loss of Y chromosome (LOY) in lung cancer

    QuackenbushLab/LOY_lung_cancer’s past year of commit activity
    R 1 0 0 0 Updated Oct 11, 2024
  • DASH Public

    DASH (Domain Aware Sparsity Heuristic) is a neural network pruning strategy that leverages domain-knowledge to obtain *meaningfully sparse* models.

    QuackenbushLab/DASH’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jun 1, 2024
  • phoenix Public

    PHOENIX: a tool to infer biologically informed NeuralODEs describing genome-wide regulatory dynamics

    QuackenbushLab/phoenix’s past year of commit activity
    Python 14 MIT 5 1 0 Updated May 8, 2024
  • yarn Public

    YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization

    QuackenbushLab/yarn’s past year of commit activity
    R 13 2 5 0 Updated Mar 4, 2024
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