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Rename `indices` to `mask`. Closes issue #91 #592

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Job	Run time
Pre-commit Checks	1m 2s
Check notebooks mypy	58s
Unit Tests (ubuntu-latest, py310)	13m 4s
Unit Tests (ubuntu-latest, py311)	13m 9s
Unit Tests (ubuntu-latest, py312)	13m 40s
Unit Tests (macos-latest, py310)	11m 3s
Unit Tests (macos-latest, py311)	14m 8s
Unit Tests (macos-latest, py312)	11m 35s
Unit Tests (windows-latest, py310)	17m 9s
Unit Tests (windows-latest, py311)	19m 48s
Unit Tests (windows-latest, py312)	19m 38s
	2h 15m 14s