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Rename `indices` to `mask`. Closes issue #91 (#92) #594

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Job	Run time
Check notebooks mypy	59s
Unit Tests (ubuntu-latest, py310)	12m 57s
Pre-commit Checks	58s
Unit Tests (ubuntu-latest, py311)	12m 49s
Unit Tests (ubuntu-latest, py312)	13m 46s
Unit Tests (macos-latest, py310)	11m 4s
Unit Tests (macos-latest, py311)	10m 10s
Unit Tests (macos-latest, py312)	12m 7s
Unit Tests (windows-latest, py310)	18m 20s
Unit Tests (windows-latest, py311)	17m 54s
Unit Tests (windows-latest, py312)	18m 51s
	2h 9m 55s