Add select on read for MWA correlator FITS files #5452
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Run Tests | |
| on: | |
| push: | |
| # This should disable running the workflow on tags, according to the | |
| # on.<push|pull_request>.<branches|tags> GitHub Actions docs. | |
| branches: | |
| - "*" | |
| pull_request: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| tests: | |
| name: Run Tests | |
| env: | |
| PYTHON: ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| # Adding -l {0} helps ensure conda can be found properly in windows. | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-latest, windows-latest] | |
| python-version: ["3.10", "3.11", "3.12"] | |
| include: | |
| - env_name: pyuvdata_tests_windows | |
| os: windows-latest | |
| - env_name: pyuvdata_tests_mac_arm | |
| os: macos-latest | |
| - env_name: pyuvdata_tests | |
| os: macos-13 | |
| python-version: "3.12" | |
| steps: | |
| - uses: actions/checkout@main | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Miniforge | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-version: latest | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: ci/${{ matrix.env_name }}.yml | |
| activate-environment: ${{ matrix.env_name }} | |
| run-post: false | |
| - name: Conda Info | |
| run: | | |
| conda info -a | |
| conda list | |
| PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"` | |
| if [[ $PYVER != $PYTHON ]]; then | |
| exit 1; | |
| fi | |
| - name: Install | |
| run: | | |
| CFLAGS="-DCYTHON_TRACE=1 -DCYTHON_TRACE_NOGIL=1" pip install . | |
| - name: Run Tests | |
| run: | | |
| python -m pytest -n auto --dist=loadfile --cov=pyuvdata --cov-config=.coveragerc --cov-report xml:./coverage.xml | |
| - uses: codecov/codecov-action@v4 | |
| if: success() | |
| with: | |
| token: ${{secrets.CODECOV_TOKEN}} #required | |
| file: ./coverage.xml #optional | |
| benchmark: | |
| name: Performance Benchmark | |
| needs: tests | |
| env: | |
| PYTHON: ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| # Adding -l {0} helps ensure conda can be found properly in windows. | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-latest, windows-latest, ubuntu-latest] | |
| python-version: ["3.12"] | |
| include: | |
| - env_name: pyuvdata_tests_windows | |
| os: windows-latest | |
| - env_name: pyuvdata_tests_mac_arm | |
| os: macos-latest | |
| - env_name: pyuvdata_tests | |
| os: macos-13 | |
| python-version: "3.12" | |
| - env_name: pyuvdata_tests | |
| os: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@main | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Miniforge | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-version: latest | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: ci/${{ matrix.env_name }}.yml | |
| activate-environment: ${{ matrix.env_name }} | |
| run-post: false | |
| - name: Conda Info | |
| run: | | |
| conda info -a | |
| conda list | |
| PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"` | |
| if [[ $PYVER != $PYTHON ]]; then | |
| exit 1; | |
| fi | |
| # also install benchmark utility | |
| - name: Install | |
| run: | | |
| pip install pytest-benchmark | |
| pip install . | |
| - name: Run benchmark | |
| run: | | |
| pytest --benchmark-only --benchmark-json output.json | |
| # Download previous benchmark result from cache (if exists) | |
| - name: Download previous benchmark data | |
| uses: actions/cache/restore@v4 | |
| with: | |
| path: ./cache | |
| key: ${{ matrix.os }}-benchmark | |
| # Run `github-action-benchmark` action | |
| # this step also EDITS the ./cache/benchmark-data.json file | |
| # We do not need to add output.json to the cache directory | |
| - name: Compare benchmarks | |
| uses: benchmark-action/github-action-benchmark@v1 | |
| with: | |
| # What benchmark tool the output.txt came from | |
| tool: 'pytest' | |
| # Where the output from the benchmark tool is stored | |
| output-file-path: output.json | |
| # Where the previous data file is stored | |
| external-data-json-path: ./cache/benchmark-data.json | |
| # Workflow will fail when an alert happens | |
| fail-on-alert: true | |
| # Comment on the PR if the branch is not a fork | |
| comment-on-alert: true | |
| # Enable Job Summary for PRs | |
| summary-always: true | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Store benchmark results | |
| uses: actions/cache/save@v4 | |
| # only store the cache if being run on main | |
| if: github.ref == 'refs/heads/main' | |
| with: | |
| path: ./cache | |
| key: ${{ matrix.os }}-benchmark |