Add select on read for MWA correlator FITS files #5452
Workflow file for this run
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name: Run Tests | |
on: | |
push: | |
# This should disable running the workflow on tags, according to the | |
# on.<push|pull_request>.<branches|tags> GitHub Actions docs. | |
branches: | |
- "*" | |
pull_request: | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
cancel-in-progress: true | |
jobs: | |
tests: | |
name: Run Tests | |
env: | |
PYTHON: ${{ matrix.python-version }} | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
# Adding -l {0} helps ensure conda can be found properly in windows. | |
shell: bash -l {0} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [macos-latest, windows-latest] | |
python-version: ["3.10", "3.11", "3.12"] | |
include: | |
- env_name: pyuvdata_tests_windows | |
os: windows-latest | |
- env_name: pyuvdata_tests_mac_arm | |
os: macos-latest | |
- env_name: pyuvdata_tests | |
os: macos-13 | |
python-version: "3.12" | |
steps: | |
- uses: actions/checkout@main | |
with: | |
fetch-depth: 0 | |
- name: Setup Miniforge | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
miniforge-version: latest | |
python-version: ${{ matrix.python-version }} | |
environment-file: ci/${{ matrix.env_name }}.yml | |
activate-environment: ${{ matrix.env_name }} | |
run-post: false | |
- name: Conda Info | |
run: | | |
conda info -a | |
conda list | |
PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"` | |
if [[ $PYVER != $PYTHON ]]; then | |
exit 1; | |
fi | |
- name: Install | |
run: | | |
CFLAGS="-DCYTHON_TRACE=1 -DCYTHON_TRACE_NOGIL=1" pip install . | |
- name: Run Tests | |
run: | | |
python -m pytest -n auto --dist=loadfile --cov=pyuvdata --cov-config=.coveragerc --cov-report xml:./coverage.xml | |
- uses: codecov/codecov-action@v4 | |
if: success() | |
with: | |
token: ${{secrets.CODECOV_TOKEN}} #required | |
file: ./coverage.xml #optional | |
benchmark: | |
name: Performance Benchmark | |
needs: tests | |
env: | |
PYTHON: ${{ matrix.python-version }} | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
# Adding -l {0} helps ensure conda can be found properly in windows. | |
shell: bash -l {0} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [macos-latest, windows-latest, ubuntu-latest] | |
python-version: ["3.12"] | |
include: | |
- env_name: pyuvdata_tests_windows | |
os: windows-latest | |
- env_name: pyuvdata_tests_mac_arm | |
os: macos-latest | |
- env_name: pyuvdata_tests | |
os: macos-13 | |
python-version: "3.12" | |
- env_name: pyuvdata_tests | |
os: ubuntu-latest | |
steps: | |
- uses: actions/checkout@main | |
with: | |
fetch-depth: 0 | |
- name: Setup Miniforge | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
miniforge-version: latest | |
python-version: ${{ matrix.python-version }} | |
environment-file: ci/${{ matrix.env_name }}.yml | |
activate-environment: ${{ matrix.env_name }} | |
run-post: false | |
- name: Conda Info | |
run: | | |
conda info -a | |
conda list | |
PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"` | |
if [[ $PYVER != $PYTHON ]]; then | |
exit 1; | |
fi | |
# also install benchmark utility | |
- name: Install | |
run: | | |
pip install pytest-benchmark | |
pip install . | |
- name: Run benchmark | |
run: | | |
pytest --benchmark-only --benchmark-json output.json | |
# Download previous benchmark result from cache (if exists) | |
- name: Download previous benchmark data | |
uses: actions/cache/restore@v4 | |
with: | |
path: ./cache | |
key: ${{ matrix.os }}-benchmark | |
# Run `github-action-benchmark` action | |
# this step also EDITS the ./cache/benchmark-data.json file | |
# We do not need to add output.json to the cache directory | |
- name: Compare benchmarks | |
uses: benchmark-action/github-action-benchmark@v1 | |
with: | |
# What benchmark tool the output.txt came from | |
tool: 'pytest' | |
# Where the output from the benchmark tool is stored | |
output-file-path: output.json | |
# Where the previous data file is stored | |
external-data-json-path: ./cache/benchmark-data.json | |
# Workflow will fail when an alert happens | |
fail-on-alert: true | |
# Comment on the PR if the branch is not a fork | |
comment-on-alert: true | |
# Enable Job Summary for PRs | |
summary-always: true | |
github-token: ${{ secrets.GITHUB_TOKEN }} | |
- name: Store benchmark results | |
uses: actions/cache/save@v4 | |
# only store the cache if being run on main | |
if: github.ref == 'refs/heads/main' | |
with: | |
path: ./cache | |
key: ${{ matrix.os }}-benchmark |