Update environment.yml and CI

.github/workflows/ci.yml

@@ -2,9 +2,9 @@ name: CI
 
 on:
   push:
-    branches: [ v2.x ]
+    branches: [ master, v2.x ]
   pull_request:
-    branches: [ v2.x ]
+    branches: [ master, v2.x ]
   schedule:
     # Run every Sunday at midnight
     - cron:  '0 0 * * 0'
@@ -26,44 +26,71 @@ jobs:
           - name: Linux (CUDA 10.2)
             cuda: "10.2.89"
             gcc: "8.5.*"
-            nvcc: "10.2"
+            cuda12: false
 
           # Latest supported versions
-          - name: Linux (CUDA 11.8)
-            cuda: "11.8.0"
-            gcc: "10.3.*"
-            nvcc: "11.8"
-
+          - name: Linux (CUDA 12.1)
+            cuda: "12.1.*"
+            gcc: "11.*"
+            cuda12: true
     steps:
     - name: Check out
       uses: actions/checkout@v2
-
-    - name: Install Mamba
-      uses: mamba-org/provision-with-micromamba@main
-      with:
-        environment-file: false
-        extra-specs: ""
-        cache-env: true
-        cache-downloads: true
+    - name: Manage disk space
+      run: |
+          sudo mkdir -p /opt/empty_dir || true
+          for d in \
+                   /opt/ghc \
+                   /opt/hostedtoolcache \
+                   /usr/lib/jvm \
+                   /usr/local/.ghcup \
+                   /usr/local/lib/android \
+                   /usr/local/share/powershell \
+                   /usr/share/dotnet \
+                   /usr/share/swift \
+                   ; do
+            sudo rsync --stats -a --delete /opt/empty_dir/ $d || true
+          done
+          sudo apt-get purge -y -f firefox \
+                                   google-chrome-stable \
+                                   microsoft-edge-stable
+          sudo apt-get autoremove -y >& /dev/null
+          sudo apt-get autoclean -y >& /dev/null
+          sudo docker image prune --all --force
+          df -h
 
     - name: Install CUDA Toolkit
+      # CUDA 12 can be installed with mamba
+      if: ${{ matrix.cuda12 == 'false' }}
       uses: Jimver/[email protected]
       with:
         cuda: ${{ matrix.cuda }}
-        linux-local-args: '["--toolkit", "--override"]' 
+        linux-local-args: '["--toolkit", "--override"]'
 
-    - name: Prepare dependencies
+    - name: Prepare dependencies (CUDA <12)
+      if: ${{ matrix.cuda12 == 'false'}}
       run: |
-        sed -i -e "/cudatoolkit/c\  - cudatoolkit ${{ matrix.cuda }}" \
+        sed -i -e "/cuda-version/d" \
+               -e "/cuda-libraries-dev/d" \
+               -e "/cuda-nvcc/d" \
                -e "/gxx_linux-64/c\  - gxx_linux-64 ${{ matrix.gcc }}" \
-               -e "/nvcc_linux-64/c\  - nvcc_linux-64 ${{ matrix.nvcc }}" \
                environment.yml
 
+    - name: Prepare dependencies (CUDA >=12)
+      if: ${{ matrix.cuda12 == 'true' }}
+      run: |
+        sed -i -e "/cuda-version/c\  - cuda-version ${{ matrix.cuda }}" \
+               -e "/gxx_linux-64/c\  - gxx_linux-64 ${{ matrix.gcc }}" \
+               environment.yml
     - name: Show dependency file
       run: cat environment.yml
-
-    - name: Install dependencies
-      run: micromamba env create -n uammd -f environment.yml
+
+    - name: Install Mamba
+      uses: mamba-org/setup-micromamba@v1
+      with:
+        environment-file: environment.yml
+        cache-environment: false
+        cache-downloads: true
       env:
         CONDA_OVERRIDE_CUDA: ${{ matrix.nvcc }}
 

.github/workflows/docs.yaml

@@ -0,0 +1,24 @@
+name: Build Documentation
+
+on:
+  push:
+    branches: [ master, v2.x ]
+  pull_request:
+    branches: [ master, v2.x ]
+
+jobs:
+  build-docs:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Install docs dependencies
+      run: |
+        pip install -r docs/requirements.txt
+      shell: bash -el {0}
+
+    - name: Build Sphinx Documentation
+      run: |
+        cd docs
+        make html
+      shell: bash -el {0}

environment.yml

@@ -1,12 +1,13 @@
+name: uammd
 channels:
   - conda-forge
 dependencies:
   - cmake >=3.22
-  - cudatoolkit 11.8.*
-  - gxx_linux-64 10.3.*
+  - cuda-version 12.*
+  - gxx_linux-64 11.*
+  - cuda-libraries-dev
+  - cuda-nvcc 
   - make
-  - nvcc_linux-64 11.8
-  - sysroot_linux-64 2.17
   - mkl-devel
   - pybind11
-  - python 3.10.*
+  - python 3.11.*