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Add the check workflow with sanitizers enabled #1

Add the check workflow with sanitizers enabled

Add the check workflow with sanitizers enabled #1

Workflow file for this run

on:
push:
branches:
- master
- GHA-sanitizers # during development
workflow_dispatch:
pull_request:
name: R-CMD-check-sanitized
concurrency:
group: ${{ github.event.pull_request.number || github.run_id }}
cancel-in-progress: true
jobs:
R-CMD-check-sanitized:
runs-on: ubuntu-latest
container:
image: docker://ghcr.io/r-hub/containers/clang-asan
strategy:
fail-fast: true
steps:
- uses: actions/checkout@v4
- name: "Set things up"
run: |
# setting aside the other.Rraw dependencies for now (will need cache)
Rscript -e 'pak::pak()'
# this should at least help with the build step
echo "MAKEFLAGS=-j$(nproc)" >> $GITHUB_ENV
# fontconfig is known to leak; add more suppressions as discovered
echo "LSAN_OPTIONS=suppressions=$(realpath .github/workflows/LSan.supp)" >> $GITHUB_ENV
# disabled by default, so reenable (needs suppressions above)
echo "ASAN_OPTIONS=detect_leaks=1" >> $GITHUB_ENV
# otherwise there are literal jumps to ud1 in the code with no diagnostics
sed -i 's/-fsanitize-trap\S*//g' /opt/R/devel-asan/lib/R/etc/Makeconf
- name: "Build"
run: R CMD build .
- name: "Check"
run: |
set +e # expect some things to fail and keep going
echo "::group::full R CMD check output"
R CMD check --no-manual data.table_*.tar.gz; res1=$?
echo "::endgroup::"
perl -nle '(print, $a=1) if /: runtime error: |ERROR: LeakSanitizer/../SUMMARY.*Sanitizer/ }{ exit $a' data.table.Rcheck/**/*.Rout*; res2=$?
# fail if R CMD check had failed or if sanitizer output found
[ $res1 -eq 0 ] && [ $res2 -eq 0 ]