Hydrolysis families and tests by LeenFahoum · Pull Request #770 · ReactionMechanismGenerator/ARC

Check failure on line 12 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'assign_labels_to_products' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of assign_labels_to_products occurs after the cyclic

import

of arc.mapping.driver.
'assign_labels_to_products' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of assign_labels_to_products occurs after the cyclic import of arc.mapping.driver.
'assign_labels_to_products' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of assign_labels_to_products occurs after the cyclic import of arc.mapping.driver.
'assign_labels_to_products' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of assign_labels_to_products occurs after the cyclic import of arc.mapping.driver.
'assign_labels_to_products' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of assign_labels_to_products occurs after the cyclic import of arc.mapping.driver.
'assign_labels_to_products' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of assign_labels_to_products occurs after the cyclic import of arc.mapping.driver.

Check failure on line 13 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'are_adj_elements_in_agreement' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of are_adj_elements_in_agreement occurs after the cyclic

import

of arc.mapping.driver.
'are_adj_elements_in_agreement' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of are_adj_elements_in_agreement occurs after the cyclic import of arc.mapping.driver.
'are_adj_elements_in_agreement' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of are_adj_elements_in_agreement occurs after the cyclic import of arc.mapping.driver.
'are_adj_elements_in_agreement' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of are_adj_elements_in_agreement occurs after the cyclic import of arc.mapping.driver.
'are_adj_elements_in_agreement' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of are_adj_elements_in_agreement occurs after the cyclic import of arc.mapping.driver.
'are_adj_elements_in_agreement' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of are_adj_elements_in_agreement occurs after the cyclic import of arc.mapping.driver.

Check failure on line 14 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'create_qc_mol' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of create_qc_mol occurs after the cyclic

import

of arc.mapping.driver.

Check failure on line 15 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'flip_map' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of flip_map occurs after the cyclic

import

of arc.mapping.driver.

Check failure on line 16 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'fingerprint' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of fingerprint occurs after the cyclic

import

of arc.mapping.driver.

Check failure on line 17 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'get_atom_indices_of_labeled_atoms_in_a_reaction' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of get_atom_indices_of_labeled_atoms_in_a_reaction occurs after the cyclic

import

of arc.mapping.driver.

Check failure on line 18 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'glue_maps' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of glue_maps occurs after the cyclic

import

of arc.mapping.driver.
'glue_maps' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of glue_maps occurs after the cyclic import of arc.mapping.driver.
'glue_maps' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of glue_maps occurs after the cyclic import of arc.mapping.driver.
'glue_maps' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of glue_maps occurs after the cyclic import of arc.mapping.driver.
'glue_maps' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of glue_maps occurs after the cyclic import of arc.mapping.driver.
'glue_maps' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of glue_maps occurs after the cyclic import of arc.mapping.driver.

Check failure on line 19 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'label_species_atoms' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of label_species_atoms occurs after the cyclic

import

of arc.mapping.driver.
'label_species_atoms' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of label_species_atoms occurs after the cyclic import of arc.mapping.driver.
'label_species_atoms' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of label_species_atoms occurs after the cyclic import of arc.mapping.driver.
'label_species_atoms' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of label_species_atoms occurs after the cyclic import of arc.mapping.driver.
'label_species_atoms' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of label_species_atoms occurs after the cyclic import of arc.mapping.driver.
'label_species_atoms' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of label_species_atoms occurs after the cyclic import of arc.mapping.driver.

Check failure on line 20 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'make_bond_changes' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of make_bond_changes occurs after the cyclic

import

of arc.mapping.driver.
'make_bond_changes' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of make_bond_changes occurs after the cyclic import of arc.mapping.driver.
'make_bond_changes' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of make_bond_changes occurs after the cyclic import of arc.mapping.driver.
'make_bond_changes' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of make_bond_changes occurs after the cyclic import of arc.mapping.driver.
'make_bond_changes' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of make_bond_changes occurs after the cyclic import of arc.mapping.driver.
'make_bond_changes' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of make_bond_changes occurs after the cyclic import of arc.mapping.driver.

Check failure on line 21 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'map_pairs' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of map_pairs occurs after the cyclic

import

of arc.mapping.driver.
'map_pairs' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of map_pairs occurs after the cyclic import of arc.mapping.driver.
'map_pairs' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of map_pairs occurs after the cyclic import of arc.mapping.driver.
'map_pairs' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of map_pairs occurs after the cyclic import of arc.mapping.driver.
'map_pairs' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of map_pairs occurs after the cyclic import of arc.mapping.driver.
'map_pairs' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of map_pairs occurs after the cyclic import of arc.mapping.driver.

Check failure on line 22 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'iterative_dfs' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of iterative_dfs occurs after the cyclic

import

of arc.mapping.driver.
'iterative_dfs' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of iterative_dfs occurs after the cyclic import of arc.mapping.driver.
'iterative_dfs' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of iterative_dfs occurs after the cyclic import of arc.mapping.driver.
'iterative_dfs' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of iterative_dfs occurs after the cyclic import of arc.mapping.driver.
'iterative_dfs' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of iterative_dfs occurs after the cyclic import of arc.mapping.driver.
'iterative_dfs' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of iterative_dfs occurs after the cyclic import of arc.mapping.driver.

Check failure on line 22 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'map_two_species' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of map_two_species occurs after the cyclic

import

of arc.mapping.driver.
'map_two_species' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of map_two_species occurs after the cyclic import of arc.mapping.driver.
'map_two_species' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of map_two_species occurs after the cyclic import of arc.mapping.driver.
'map_two_species' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of map_two_species occurs after the cyclic import of arc.mapping.driver.
'map_two_species' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of map_two_species occurs after the cyclic import of arc.mapping.driver.
'map_two_species' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of map_two_species occurs after the cyclic import of arc.mapping.driver.

Check failure on line 23 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'pairing_reactants_and_products_for_mapping' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of pairing_reactants_and_products_for_mapping occurs after the cyclic

import

of arc.mapping.driver.
'pairing_reactants_and_products_for_mapping' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of pairing_reactants_and_products_for_mapping occurs after the cyclic import of arc.mapping.driver.
'pairing_reactants_and_products_for_mapping' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of pairing_reactants_and_products_for_mapping occurs after the cyclic import of arc.mapping.driver.
'pairing_reactants_and_products_for_mapping' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of pairing_reactants_and_products_for_mapping occurs after the cyclic import of arc.mapping.driver.
'pairing_reactants_and_products_for_mapping' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of pairing_reactants_and_products_for_mapping occurs after the cyclic import of arc.mapping.driver.
'pairing_reactants_and_products_for_mapping' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of pairing_reactants_and_products_for_mapping occurs after the cyclic import of arc.mapping.driver.

Check failure on line 24 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'copy_species_list_for_mapping' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of copy_species_list_for_mapping occurs after the cyclic

import

of arc.mapping.driver.
'copy_species_list_for_mapping' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of copy_species_list_for_mapping occurs after the cyclic import of arc.mapping.driver.
'copy_species_list_for_mapping' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of copy_species_list_for_mapping occurs after the cyclic import of arc.mapping.driver.
'copy_species_list_for_mapping' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of copy_species_list_for_mapping occurs after the cyclic import of arc.mapping.driver.
'copy_species_list_for_mapping' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of copy_species_list_for_mapping occurs after the cyclic import of arc.mapping.driver.
'copy_species_list_for_mapping' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of copy_species_list_for_mapping occurs after the cyclic import of arc.mapping.driver.

Check failure on line 25 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'find_all_bdes' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of find_all_bdes occurs after the cyclic

import

of arc.mapping.driver.

Check failure on line 26 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'cut_species_based_on_atom_indices' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of cut_species_based_on_atom_indices occurs after the cyclic

import

of arc.mapping.driver.

Check failure on line 27 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'update_xyz' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of update_xyz occurs after the cyclic

import

of arc.mapping.driver.

Check failure on line 28 in arc/mapping/driver.py

Code scanning / CodeQL

Module-level cyclic import Error

'RESERVED_FINGERPRINT_KEYS' may not be defined if module

arc.mapping.engine

is imported before module

arc.mapping.driver

, as the

definition

of RESERVED_FINGERPRINT_KEYS occurs after the cyclic

import

of arc.mapping.driver.

Check failure on line 22 in arc/mapping/engine.py

Code scanning / CodeQL

Module-level cyclic import Error

'ReactionFamily' may not be defined if module

arc.reaction.family

is imported before module

arc.mapping.engine

, as the

definition

of ReactionFamily occurs after the cyclic

import

of arc.mapping.engine.

Check failure on line 22 in arc/mapping/engine.py

Code scanning / CodeQL

Module-level cyclic import Error

'get_reaction_family_products' may not be defined if module

arc.reaction.family

is imported before module

arc.mapping.engine

, as the

definition

of get_reaction_family_products occurs after the cyclic

import

of arc.mapping.engine.

Check notice on line 1394 in arc/mapping/engine.py

Code scanning / CodeQL

Unused local variable Note

Variable product_pairs is not used.

Check failure on line 529 in arc/mapping/engine_test.py

Code scanning / CodeQL

Wrong number of arguments in a call Error

Call to

function assign_labels_to_products

with too few arguments; should be no fewer than 2.

Check failure on line 646 in arc/mapping/engine_test.py

Code scanning / CodeQL

Wrong number of arguments in a call Error

Call to

function assign_labels_to_products

with too few arguments; should be no fewer than 2.

Check notice on line 859 in arc/mapping/engine_test.py

Code scanning / CodeQL

Commented-out code Note

This comment appears to contain commented-out code.

Check failure on line 1333 in arc/mapping/engine_test.py

Code scanning / CodeQL

Wrong number of arguments in a call Error

Call to

function assign_labels_to_products

with too few arguments; should be no fewer than 2.

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Hydrolysis families and tests #770

Hydrolysis families and tests #770

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Hydrolysis families and tests #770

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tests for new hydrolysis families

Hydrolysis families and tests #770

30 new alerts including 26 errors

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