Small fix to absence_of_cat_windows.diff

L#ots of the babel executable tests are broken for windows build.

The python bindings do work though, so I think this is sufficient for RMG.
Someone else can deal with fixing babel.exe

openbabel/absence_of_cat_windows.diff

@@ -8,6 +8,6 @@ index 2563226..e7298ce 100644
              COMMAND ${CMAKE_COMMAND} -E echo "  sys.setdlopenflags(sys.getdlopenflags() | dl.RTLD_GLOBAL)" >> ob.py
 -            COMMAND cat ${openbabel_SOURCE_DIR}/scripts/python/openbabel.py >> ob.py
 +            COMMAND type python\openbabel.py >> ob.py
-#             COMMAND ${CMAKE_COMMAND} -E copy ob.py ${openbabel_SOURCE_DIR}/scripts/python/openbabel.py
+             COMMAND ${CMAKE_COMMAND} -E copy ob.py ${openbabel_SOURCE_DIR}/scripts/python/openbabel.py
              COMMAND ${CMAKE_COMMAND} -E remove ob.py
              MAIN_DEPENDENCY openbabel-python.i 

openbabel/bld.bat

@@ -4,7 +4,7 @@ set F77=gfortran
 set F90=gfortran
 
 copy "%PREFIX%\..\..\libs\libpython27.a" "%PREFIX%\libs\libpython27.a"
-cp "%PREFIX%\..\..\Lib\distutils\distutils.cfg" "%PREFIX%\Lib\distutils\distutils.cfg"
+copy "%PREFIX%\..\..\Lib\distutils\distutils.cfg" "%PREFIX%\Lib\distutils\distutils.cfg"
 pip install -i https://pypi.anaconda.org/rmg/simple pycairo
 
 cmake -DCMAKE_INSTALL_PREFIX=%PREFIX% ^
@@ -22,6 +22,14 @@ mingw32-make install
 ::we put them there manually after the build.  This may be possible from CMake
 ::using option -DPYTHON_PREFIX from ob wiki, but doesn't seem to work
 
+
+:: Copy the key binary files to the site packages.  this is an unfortunate workaround for windows
+copy bin\_openbabel.pyd %PREFIX%\Lib\site-packages
+xcopy %PREFIX%\bin %PREFIX%\Library\bin /E
+rmdir /s %PREFIX%\bin
+
+:: Install the python site package
 cd scripts\python
-%PYTHON% setup.py build_ext --compiler=mingw32 --inplace
 %PYTHON% setup.py install
+
+

openbabel/dont_create_extension.diff

@@ -0,0 +1,13 @@
+diff --git a/a/setup.py b/b/setup.py
+index ebdda33..2768b80 100644
+--- scripts/python/setup.py
++++ scripts/python/setup.py
+@@ -34,7 +34,7 @@ setup(name='openbabel',
+       url='http://openbabel.org/',
+       license='http://www.gnu.org/copyleft/gpl.html',
+       py_modules=['openbabel','pybel'],
+-      ext_modules=[obExtension],
++      #ext_modules=[obExtension],
+       description = 'openbabel: Python interface to the Open Babel chemistry library',
+       classifiers=[
+       'Development Status :: 5 - Production/Stable',

openbabel/meta.yaml

@@ -19,6 +19,7 @@ source:
         - libxml_windows_patch.diff # [win]
         - windows_swig_comment.diff # [win]
         - absence_of_cat_windows.diff # [win]
+        - dont_create_extension.diff # [win]
 
 build:
     number: 4
@@ -52,9 +53,7 @@ test:
     - cd $SRC_DIR/test ; python testkekule.py [unix]
     - cd $SRC_DIR/test ; python testbindings.py [unix]
     - cd $SRC_DIR/test ; python testexample.py [unix]
-    - python %SRC_DIR%\test\test_pybel.py [win]
-    - python %SRC_DIR%\test\testbabel.py [win]
-    - python %SRC_DIR%\test\testkekule.py [win]
+    - python run_test.py [win]
     - python %SRC_DIR%\test\testbindings.py [win]
     - python %SRC_DIR%\test\testexample.py [win]