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Update freesurfer.yaml
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the way it was currently specifified was causing the next comment to be part of the variable: 
```
ENV FSF_OUTPUT_FORMAT="nii.gz# mni env requirements"
```

but should have been:
```
ENV FSF_OUTPUT_FORMAT=".nii.gz"
```
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stebo85 authored Feb 3, 2025
1 parent dda707f commit 25dc6ba
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion neurodocker/templates/freesurfer.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -71,7 +71,7 @@ binaries:
# default freesurfer options
FS_OVERRIDE: '0'
FIX_VERTEX_AREA: ''
FSF_OUTPUT_FORMAT: nii.gz
FSF_OUTPUT_FORMAT: 'nii.gz'
# mni environment requirements
MINC_BIN_DIR: '{{ self.install_path }}/mni/bin'
MINC_LIB_DIR: '{{ self.install_path }}/mni/lib'
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