Merge pull request #12 from ReproNim/nf-reprostim1 #40

	---
	name: PyTest

	on:
	push:
	branches: [main]
	pull_request:
	branches: [main]

	permissions:
	contents: read

	env:
	POSTGRES_DB: rmdb

	jobs:
	pytest:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python:
	- '3.10'
	- '3.11'
	- '3.12'
	steps:
	- name: Configure environment
	run: \|
	git config --global user.name "repromon-test"
	git config --global user.email "[email protected]"
	uname -a
	date -Is
	date -u

	- name: Checkout source code
	uses: actions/checkout@v4
	with:
	fetch-depth: 0

	- name: Setup Python
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python }}

	- name: Create venv and poetry build
	run: \|
	pwd
	ls -l
	pip install poetry
	poetry config virtualenvs.create false
	poetry config virtualenvs.in-project true
	poetry env use `which python`
	python --version
	poetry --version
	poetry install
	poetry build
	shell: bash

	- name: Run pytest
	run: \|
	poetry run pytest --cov=. --cov-report=xml
	shell: bash

	- name: Upload coverage reports to Codecov
	uses: codecov/codecov-action@v3
	env:
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

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