generated from imfing/hextra-starter-template
-
Notifications
You must be signed in to change notification settings - Fork 5
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Add resources section, which was erronously ignored
- Loading branch information
Showing
7 changed files
with
100 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,7 @@ | ||
# Hugo output | ||
public/ | ||
resources/ | ||
!content/resources/ | ||
.hugo_build.lock | ||
|
||
# Editor | ||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,7 @@ | ||
--- | ||
title: Resources | ||
type: resources | ||
--- | ||
|
||
This is the resources top-level page. | ||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,19 @@ | ||
--- | ||
title: Getting Started with ReproNIM | ||
prev: /resources | ||
weight: 2 | ||
--- | ||
|
||
this is the index page for getting started | ||
|
||
## Introduction | ||
|
||
### The ReproNIM philosophy | ||
|
||
Incorporate reproducible practices into the typical neuroimaging workflow. These practices ensure more robust, well documented studies at the end for you, your colleagues and your peers. | ||
|
||
### Personas | ||
![](/images/user1.jpg) | ||
![](/images/user2.jpg) | ||
![](/images/user3.jpg) | ||
![](/images/user4.jpg) |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,34 @@ | ||
--- | ||
title: The Basics of Reproducible Neuroimaging | ||
linkTitle: Basics | ||
type: docs | ||
weight: 1 | ||
--- | ||
|
||
## ReproNIM Best Practices | ||
|
||
1. Proper planning: | ||
1. See: Reproducible Results | ||
1. Good science basics, how many subjects etc | ||
1. Pre-registration, review from statistician | ||
1. Data and metadata management: | ||
1. Follow NIH Mandates [Citation needed] | ||
1. Use standard data formats and extend them to meet your needs. | ||
1. Use version control from start to finish | ||
1. Annotate data using standard, reproducible procedures | ||
1. Software management: | ||
1. Use released versions of open source software tools. | ||
1. Automate the installation of your code and its dependencies | ||
1. Automate the execution of your data analysis | ||
1. Use containers where reasonable | ||
1. Re-executable publications | ||
|
||
## How much will it cost? | ||
|
||
1. Direct Resource Cost: Are the infrastructure requirements currently met? (Cloud Infrastructure and Physical Hardware) | ||
1. What tools and standards need to be adopted? | ||
1. Do any lab members/collaborators already have experience with the new tools and standards? | ||
1. How comfortable are the collaborators with technical fundamentals like the command line? | ||
|
||
## Basic Implementations | ||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,8 @@ | ||
--- | ||
title: Understanding and implementing the ReproNIM ecosystem | ||
linkTitle: Ecosystem | ||
type: docs | ||
weight: 10 | ||
--- | ||
|
||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,13 @@ | ||
--- | ||
title: Basic implementations | ||
linkTitle: Implementations | ||
type: docs | ||
weight: 5 | ||
--- | ||
|
||
## Use Cases | ||
|
||
1. Where can I get training on reproducible practices? (DBK) | ||
1. How can I get my scanning data from the collection instrument to a form where it is easier to analyze and share? (DBK) | ||
1. How can I simplify the process of updating and re-applying workflows when changes are necessary? (DNK) | ||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,18 @@ | ||
--- | ||
title: ReproNIM Guide | ||
type: resources | ||
--- | ||
|
||
This is a demo of the theme's documentation layout. | ||
|
||
## Hello, World! | ||
|
||
```go {filename="main.go"} | ||
package main | ||
|
||
import "fmt" | ||
|
||
func main() { | ||
fmt.Println("Hello, World!") | ||
} | ||
``` |