adding context to reproschema-py PR GA workflow #60
Workflow file for this run
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| # - validate the protocol and activities in the repo with reproschema.py | |
| # - triggers a release when a github release is published | |
| name: validate and release | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: ['*'] | |
| # Allow to trigger the generation of release files automatically | |
| workflow_dispatch: | |
| inputs: | |
| version: | |
| description: 'version number' | |
| required: true | |
| type: string | |
| jobs: | |
| validate: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Install dependencies | |
| # TODO This installs reproschema from source and not from pypi | |
| # This may not be the optimal way of doing it. | |
| run: | | |
| python -m pip install --upgrade pip setuptools | |
| pip install git+https://github.com/ReproNim/reproschema-py.git | |
| - name: Validate content | |
| run: | | |
| python scripts/jsonParser.py | |
| reproschema validate examples | |
| release: | |
| needs: [validate] | |
| if: github.event_name == 'workflow_dispatch' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools | |
| pip install linkml astor pre-commit | |
| pip install git+https://github.com/ReproNim/reproschema-py.git | |
| - name: Generate pydantic using linml and fixing it with reproschema specific script | |
| run: | | |
| gen-pydantic --pydantic-version 2 linkml-schema/reproschema.yaml > reproschema_model.py | |
| python scripts/fix_pydantic.py reproschema_model.py | |
| pre-commit run --files reproschema_model.py || true | |
| - name: Generate jsonld format using linkml | |
| run: | | |
| gen-jsonld --context https://raw.githubusercontent.com/ReproNim/reproschema/main/contexts/reproschema linkml-schema/reproschema.yaml > reproschema.jsonld | |
| - name: Generate n-triples and turtle formats using reproschema | |
| run: | | |
| reproschema convert --format n-triples reproschema.jsonld > reproschema.nt | |
| reproschema convert --format turtle reproschema.jsonld > reproschema.ttl | |
| - name: Make a release | |
| run: | | |
| echo "Making a release ${{ inputs.version }}" | |
| mkdir releases/${{ inputs.version }} | |
| cp contexts/reproschema releases/${{ inputs.version }}/reproschema | |
| mv reproschema_model.py releases/${{ inputs.version }}/reproschema_model.py | |
| mv reproschema.jsonld releases/${{ inputs.version }}/reproschema.jsonld | |
| mv reproschema.nt releases/${{ inputs.version }}/reproschema.nt | |
| mv reproschema.ttl releases/${{ inputs.version }}/reproschema.ttl | |
| # python scripts/makeRelease.py ${{ inputs.version }} | |
| - name: Open pull requests to add files | |
| uses: peter-evans/create-pull-request@v6 | |
| with: | |
| commit-message: "[REL] adding files to for release ${{ inputs.version }}" | |
| base: main | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| delete-branch: true | |
| title: "[REL] adding files to for release ${{ inputs.version }}" | |
| body: done via this [GitHub Action](https://github.com/${{ github.repository_owner }}/reproschema/blob/main/.github/workflows/validate_and_release.yml) |