WIP: updated branch with changes to support linkml schema

contexts/reproschema_new

@@ -0,0 +1,365 @@
+{
+   "comments": {
+      "description": "Auto generated by LinkML jsonld context generator",
+      "generation_date": "2024-02-16T13:37:16",
+      "source": "reproschema.yaml"
+   },
+   "@context": {
+      "linkml": "https://w3id.org/linkml/",
+      "nidm": "http://purl.org/nidash/nidm#",
+      "owl": "http://www.w3.org/2002/07/owl#",
+      "prov": "http://www.w3.org/ns/prov#",
+      "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
+      "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
+      "reproschema": "http://schema.repronim.org/",
+      "schema": "http://schema.org/",
+      "skos": "http://www.w3.org/2004/02/skos/core#",
+      "xml": {
+         "@id": "http://www.w3.org/XML/1998/namespace",
+         "@prefix": true
+      },
+      "xsd": "http://www.w3.org/2001/XMLSchema#",
+      "@vocab": "http://example.org/example/",
+      "@version": 1.1,
+      "@language": "en",
+      "id": "@id",
+      "category": "@type",
+      "ui": "@nest",
+      "about": {
+         "@id": "schema:about"
+      },
+      "additionalNotesObj": {
+         "@id": "reproschema:additionalNotesObj"
+      },
+      "addProperties": {
+         "@id": "reproschema:addProperties",
+         "@container": "@set",
+         "@nest": "ui"
+      },
+      "allow": {
+         "@type": "@id",
+         "@id": "reproschema:allow",
+         "@container": "@set",
+         "@nest": "ui"
+      },
+      "altLabel": {
+         "@id": "skos:altLabel",
+         "@container": "@language"
+      },
+      "associatedMedia": {
+         "@id": "schema:associatedMedia"
+      },
+      "audio": {
+         "@type": "@id",
+         "@id": "schema:audio"
+      },
+      "choices": {
+         "@id": "reproschema:choices"
+      },
+      "citation": {
+         "@id": "schema:citation",
+         "@container": "@language"
+      },
+      "column": {
+         "@id": "reproschema:column",
+         "@type": "xsd:string"
+      },
+      "compute": {
+         "@id": "reproschema:compute",
+         "@container": "@list"
+      },
+      "contentUrl": {
+         "@type": "@id",
+         "@id": "schema:contentUrl"
+      },
+      "cronTable": {
+         "@id": "reproschema:cronTable"
+      },
+      "datumType": {
+         "@id": "reproschema:datumType"
+      },
+      "description": {
+         "@id": "schema:description",
+         "@container": "@language"
+      },
+      "endedAtTime": {
+         "@type": "xsd:dateTime",
+         "@id": "prov:endedAtTime"
+      },
+      "generated": {
+         "@id": "prov:generated"
+      },
+      "image": {
+         "@type": "@id",
+         "@id": "schema:image"
+      },
+      "imageUrl": {
+         "@type": "@id",
+         "@id": "reproschema:imageUrl"
+      },
+      "inLanguage": {
+         "@id": "schema:inLanguage",
+         "@language": null
+      },
+      "inputType": {
+         "@id": "reproschema:inputType",
+         "@type": "xsd:string",
+         "@nest": "ui"
+      },
+      "isAbout": {
+         "@type": "@id",
+         "@id": "reproschema:isAbout"
+      },
+      "isPartOf": {
+         "@type": "@id",
+         "@id": "schema:isPartOf"
+      },
+      "isVis": {
+         "@id": "reproschema:isVis"
+      },
+      "jsExpression": {
+         "@id": "reproschema:jsExpression"
+      },
+      "landingPage": {
+         "@type": "@id",
+         "@id": "reproschema:landingPage",
+         "@container": "@set"
+      },
+      "limit": {
+         "@id": "reproschema:limit",
+         "@language": null
+      },
+      "maxRetakes": {
+         "@id": "reproschema:maxRetakes"
+      },
+      "maxValue": {
+         "@id": "schema:maxValue"
+      },
+      "message": {
+         "@id": "reproschema:message",
+         "@container": "@language"
+      },
+      "messages": {
+         "@container": "@set",
+         "@id": "reproschema:messages"
+      },
+      "minValue": {
+         "@id": "schema:minValue"
+      },
+      "multipleChoice": {
+         "@type": "xsd:boolean",
+         "@id": "reproschema:multipleChoice"
+      },
+      "name": {
+         "@id": "schema:name",
+         "@container": "@language"
+      },
+      "order": {
+         "@type": "@id",
+         "@id": "reproschema:order",
+         "@container": "@list",
+         "@nest": "ui"
+      },
+      "overrideProperties": {
+         "@id": "reproschema:overrideProperties",
+         "@container": "@set",
+         "@nest": "ui"
+      },
+      "preamble": {
+         "@id": "reproschema:preamble",
+         "@container": "@language"
+      },
+      "prefLabel": {
+         "@id": "skos:prefLabel",
+         "@container": "@language"
+      },
+      "question": {
+         "@id": "schema:question",
+         "@container": "@language"
+      },
+      "randomMaxDelay": {
+         "@id": "reproschema:randomMaxDelay",
+         "@language": null
+      },
+      "readonlyValue": {
+         "@type": "xsd:boolean",
+         "@id": "schema:readonlyValue"
+      },
+      "responseOptions": {
+         "@type": "@id",
+         "@id": "reproschema:responseOptions"
+      },
+      "schedule": {
+         "@id": "reproschema:schedule",
+         "@language": null
+      },
+      "schemaVersion": {
+         "@id": "schema:schemaVersion",
+         "@language": null
+      },
+      "shuffle": {
+         "@type": "xsd:boolean",
+         "@id": "reproschema:shuffle",
+         "@nest": "ui"
+      },
+      "source": {
+         "@id": "reproschema:source",
+         "@type": "xsd:string"
+      },
+      "startedAtTime": {
+         "@type": "xsd:dateTime",
+         "@id": "prov:startedAtTime"
+      },
+      "statusOptions": {
+         "@id": "reproschema:statusOptions"
+      },
+      "subject_id": {
+         "@id": "nidm:subject_id"
+      },
+      "unitOptions": {
+         "@type": "@id",
+         "@id": "reproschema:unitOptions"
+      },
+      "url": {
+         "@type": "@id",
+         "@id": "schema:url"
+      },
+      "used": {
+         "@type": "@id",
+         "@id": "prov:used"
+      },
+      "value": {
+         "@id": "reproschema:value"
+      },
+      "valueRequired": {
+         "@type": "xsd:boolean",
+         "@id": "schema:valueRequired"
+      },
+      "valueType": {
+         "@type": "@id",
+         "@id": "reproschema:valueType"
+      },
+      "variableName": {
+         "@id": "reproschema:variableName"
+      },
+      "version": {
+         "@id": "schema:version",
+         "@language": null
+      },
+      "video": {
+         "@type": "@id",
+         "@id": "schema:video"
+      },
+      "wasAssociatedWith": {
+         "@type": "@id",
+         "@id": "prov:wasAssociatedWith"
+      },
+      "wasAttributedTo": {
+         "@type": "@id",
+         "@id": "prov:wasAttributedTo"
+      },
+      "Activity": {
+         "@id": "reproschema:Activity"
+      },
+      "AdditionalNoteObj": {
+         "@id": "reproschema:AdditionalNoteObj"
+      },
+      "AdditionalProperty": {
+         "@id": "reproschema:AdditionalProperty"
+      },
+      "Agent": {
+         "@id": "prov:Agent"
+      },
+      "AllowExport": {
+         "@id": "reproschema:AllowExport"
+      },
+      "AllowReplay": {
+         "@id": "reproschema:AllowReplay"
+      },
+      "AutoAdvance": {
+         "@id": "reproschema:AutoAdvance"
+      },
+      "Choice": {
+         "@id": "reproschema:Choice"
+      },
+      "ComputeSpecification": {
+         "@id": "reproschema:ComputeSpecification"
+      },
+      "CreativeWork": {
+         "@id": "schema:CreativeWork"
+      },
+      "DisableBack": {
+         "@id": "reproschema:DisableBack"
+      },
+      "DontKnow": {
+         "@id": "reproschema:DontKnow"
+      },
+      "Item": {
+         "@id": "reproschema:Field"
+      },
+      "LandingPage": {
+         "@id": "reproschema:LandingPage"
+      },
+      "LangString": {
+         "@id": "rdf:langString"
+      },
+      "MediaObject": {
+         "@id": "schema:MediaObject"
+      },
+      "MessageSpecification": {
+         "@id": "reproschema:MessageSpecification"
+      },
+      "OverrideProperty": {
+         "@id": "reproschema:OverrideProperty"
+      },
+      "Participant": {
+         "@id": "reproschema:Participant"
+      },
+      "Protocol": {
+         "@id": "reproschema:Protocol"
+      },
+      "Response": {
+         "@id": "reproschema:Response"
+      },
+      "ResponseActivity": {
+         "@id": "reproschema:ResponseActivity"
+      },
+      "ResponseOption": {
+         "@id": "reproschema:ResponseOption"
+      },
+      "Schedule": {
+         "@id": "reproschema:Schedule"
+      },
+      "Skipped": {
+         "@id": "reproschema:Skipped"
+      },
+      "SoftwareAgent": {
+         "@id": "reproschema:SoftwareAgent"
+      },
+      "StructuredValue": {
+         "@id": "schema:StructuredValue"
+      },
+      "Thing": {
+         "@id": "schema:Thing"
+      },
+      "TimedOut": {
+         "@id": "reproschema:TimedOut"
+      },
+      "UiActivity": {
+         "@id": "http://example.org/example/UiActivity"
+      },
+      "UiField": {
+         "@id": "http://example.org/example/UiField"
+      },
+      "UiProtocol": {
+         "@id": "http://example.org/example/UiProtocol"
+      },
+      "UnitOption": {
+         "@id": "reproschema:UnitOption"
+      },
+      "VideoObject": {
+         "@id": "schema:VideoObject"
+      }
+   }
+}
+

examples/activities/activity1.jsonld

@@ -1,5 +1,5 @@
 {
-    "@context": "../../contexts/generic",
+    "@context": "../../contexts/reproschema_new",
     "@type": "reproschema:Activity",
     "@id": "activity1.jsonld",
     "prefLabel": "Example 1",
@@ -31,21 +31,21 @@
         "addProperties": [
             {   "isAbout": "items/item1.jsonld",
                 "variableName": "item1",
-                "requiredValue": true,
+                "valueRequired": true,
                 "isVis": true,
                 "randomMaxDelay": "PT2H",
                 "limit": "P2D",
                 "schedule": "R/2020-08-01T08:00:00Z/P1D"
             },
             {   "isAbout": "items/item2.jsonld",
                 "variableName": "item2",
-                "requiredValue": true,
+                "valueRequired": true,
                 "isVis": true,
                 "allow": ["reproschema:Skipped"]
             },
             {   "isAbout": "items/activity1_total_score",
                 "variableName": "activity1_total_score",
-                "requiredValue": true,
+                "valueRequired": true,
                 "isVis": false
             }
         ],