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Merge pull request #104 from RhodiumGroup/pangeify_octave
WIP: Pangeify+octave
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,110 @@ | ||
| name: base | ||
| channels: | ||
| - conda-forge | ||
| dependencies: | ||
| - beautifulsoup4=4.8.1=py37_0 | ||
| - boto3=1.10.34=py_0 | ||
| - bqplot=0.12.1=py_0 | ||
| - bumpversion=0.5.3=py_1001 | ||
| - cachecontrol=0.12.5=py_0 | ||
| - cartopy=0.17.0=py37h423102d_1009 | ||
| - cftime=1.0.4.2=py37hc1659b7_0 | ||
| - click=7.0=py_0 | ||
| - compilers=1.0.4=0 | ||
| - dask=2.8.1=py_0 | ||
| - dask-glm=0.2.0=py_1 | ||
| - dask-ml=1.1.1=py_0 | ||
| - datashader=0.8.0=py_0 | ||
| - distributed=2.8.1=py_0 | ||
| - dropbox=9.4.0=py_0 | ||
| # need to make sure we get esmpy compiled with mpi otherwise xesmf regridding | ||
| # won't work | ||
| - esmpy=8.0.0=mpi_mpich_py37ha9b28fa_101 # pinkeep: esmpy=8.0.0=mpi_mpich_py37ha9b28fa_101 | ||
| - fastparquet=0.3.2=py37hc1659b7_0 | ||
| - fiona=1.8.13=py37h900e953_0 | ||
| - fusepy=3.0.1=py_0 | ||
| # this gcc pin is necessary b/c of a weird feature in the h553295d_15 build | ||
| # which makes it hard to build numpy-based cython extensions (like pyclaw). | ||
| # we should try removing it whenever we next do an update and see if Clawpack | ||
| # can still be built | ||
| - gcc_linux-64=7.3.0=h553295d_14 # pinkeep: gcc_linux-64=7.3.0=h553295d_14 | ||
| - gcsfs=0.5.3=py_0 | ||
| - gdal=3.0.2=py37hbb6b9fb_5 | ||
| - geoalchemy2=0.6.3=py_0 | ||
| - geopandas=0.6.2=py_0 | ||
| - geopy=1.20.0=py_0 | ||
| - geotiff=1.5.1=hbd99317_7 | ||
| - geoviews=1.6.6=py_0 | ||
| - git=2.24.0=pl526hce37bd2_1 | ||
| - gitpython=3.0.5=py_0 | ||
| - google-cloud-container=0.3.0=py37_0 | ||
| - google-cloud-storage=1.23.0=py37_0 | ||
| - holoviews=1.12.7=py_0 | ||
| - h5netcdf=0.7.4=py_0 | ||
| - icu=64.2=he1b5a44_1 | ||
| - iris=2.2.0=py37_1003 | ||
| - jedi=0.15.1=py37_0 | ||
| # need server proxy on workers if using remote scheduler | ||
| - jupyter-server-proxy=1.2.0=py_0 | ||
| - kubernetes | ||
| - lapack=3.6.1=ha44fe06_2 | ||
| - lz4=2.2.1=py37hd79334b_0 | ||
| - make=4.2.1=h14c3975_2004 | ||
| - matplotlib=3.1.2=py37_1 | ||
| - nc-time-axis=1.2.0=py_0 | ||
| - ncurses=6.1=hf484d3e_1002 | ||
| - netcdf-fortran=4.5.2=mpi_mpich_ha8580a0_2 | ||
| - netcdf4=1.5.3=mpi_mpich_py37h01ee55b_1 | ||
| - numba=0.46.0=py37hb3f55d8_1 | ||
| - numcodecs=0.6.4=py37he1b5a44_0 | ||
| - pandas=0.25.3=py37hb3f55d8_0 | ||
| # for geoviews | ||
| - phantomjs=2.1.1=1 | ||
| - pip=19.3.1=py37_0 | ||
| - plotly=4.3.0=py_0 | ||
| - polyline=1.4.0=py_0 | ||
| - pygeos=0.5=py37h5d51c17_1 | ||
| - pyinterp=0.0.7=py37h97f2665_0 | ||
| - pyshp=2.1.0=py_0 | ||
| - python=3.7.3=h357f687_2 # pinkeep: python=3.7 | ||
| - python-blosc=1.8.1=py37hf484d3e_0 | ||
| - python-snappy=0.5.4=py37hee44bf9_1 | ||
| - pyviz_comms=0.7.2=py_0 | ||
| - pyyaml=5.2=py37h516909a_0 | ||
| - rasterio=1.1.1=py37h900e953_0 | ||
| - regionmask=0.4.0=py_0 | ||
| - rtree=0.8.3=py37h7b0cdae_1003 | ||
| - scikit-image=0.16.2=py37hb3f55d8_0 | ||
| - scikit-learn=0.22=py37hcdab131_0 | ||
| - scipy=1.3.2=py37h921218d_0 | ||
| - seaborn=0.9.0=py_2 | ||
| # for geoviews | ||
| - selenium=3.141.0=py37h516909a_1000 | ||
| - shapely=1.6.4=py37h5d51c17_1007 | ||
| - sparse=0.8.0=py_0 | ||
| - statsmodels=0.10.2=py37hc1659b7_0 | ||
| - tini=0.18.0=h14c3975_1001 | ||
| - unzip=6.0=h516909a_0 | ||
| - uritemplate=3.0.0=py_1 | ||
| - xarray=0.14.1=py_0 | ||
| - xesmf=0.2.1=py_0 | ||
| - xgcm=0.2.0=py_0 | ||
| - xhistogram=0.1.1=py_0 | ||
| - xlrd=1.2.0=py_0 | ||
| - xrft=0.2.0=py_0 | ||
| - zarr=2.3.2=py37_0 | ||
| - zeromq=4.3.2=he1b5a44_2 | ||
| - zict=1.0.0=py_0 | ||
| - pip: | ||
| - mapbox==0.18.0 | ||
| - py-noaa==1.0 | ||
| - sidecar==0.3.0 | ||
| - climate-toolbox==0.1.5 | ||
| - impactlab-tools==0.4.0 | ||
| - parameterize-jobs==0.1.1 | ||
| - git+https://github.com/rhodiumgroup/rhg_compute_tools.git@allow-remote-scheduler#egg=rhg_compute_tools | ||
| - git+https://github.com/NCAR/intake-esm.git#egg=intake_esm | ||
| # need to install from master until 0.10.1 | ||
| # due to handling of remote scheduler | ||
| # (we also should at some point switch to dask-gateway instead of dask-kubernetes) | ||
| - git+https://github.com/dask/dask-kubernetes.git#egg=dask_kubernetes |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| #!/bin/sh | ||
| # install apt-get packages | ||
| apt-get update -y --no-install-recommends | ||
| apt-get install -yq --no-install-recommends \ | ||
| apt-utils \ | ||
| bzip2 \ | ||
| ca-certificates \ | ||
| curl \ | ||
| lsb-release \ | ||
| gnupg2 \ | ||
| sudo \ | ||
| libgl1-mesa-glx \ | ||
| wget | ||
|
|
||
| # install gcsfuse, google cloud sdk, kubectl | ||
| # (need curl to be installed earlier) | ||
| export GCSFUSE_REPO=gcsfuse-`lsb_release -c -s` | ||
| echo "deb http://packages.cloud.google.com/apt $GCSFUSE_REPO main" | \ | ||
| tee /etc/apt/sources.list.d/gcsfuse.list | ||
| echo "deb [signed-by=/usr/share/keyrings/cloud.google.gpg] \ | ||
| https://packages.cloud.google.com/apt cloud-sdk main" | \ | ||
| tee -a /etc/apt/sources.list.d/google-cloud-sdk.list | ||
| curl https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key add - | ||
| curl https://packages.cloud.google.com/apt/doc/apt-key.gpg | \ | ||
| apt-key --keyring /usr/share/keyrings/cloud.google.gpg add - | ||
| apt-get update -y | ||
| apt-get install -yq --no-install-recommends gcsfuse google-cloud-sdk kubectl | ||
| alias googlefuse=/usr/bin/gcsfuse | ||
|
|
||
| apt-get clean | ||
|
|
||
| # get cloud sql proxy | ||
| wget https://dl.google.com/cloudsql/cloud_sql_proxy.linux.amd64 -O /usr/bin/cloud_sql_proxy | ||
| chmod +x /usr/bin/cloud_sql_proxy | ||
|
|
||
| # filepath curating | ||
| chmod +x /usr/bin/prepare.sh | ||
| mkdir /gcs | ||
| mkdir /opt/app | ||
|
|
||
| # super sketchy hack to get around our need for compiler_compat binaries and some | ||
| # other things that cause problems together? | ||
| # see https://github.com/ContinuumIO/anaconda-issues/issues/11152 | ||
| rm -rf /opt/conda/compiler_compat/ld |
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