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Installation
Andrew Roth edited this page Jan 4, 2017
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THIS PAGE IS A WORK IN PROGRESS
The source code implemented in Python is available under an open source license. The software can be downloaded from the downloads page. Currently Linux is supported.
Though not explicitly required by the JointSNVMix software, samtools can be useful for creating bam, bam index and fasta index files that are required by JointSNVMix.
Before installing the software the following libraries are required.
- Python >= 2.7
Once all dependencies have been installed JointSNVMix can be installed as follows.
- tar -zxvf JointSNVMix-x.y.z.tar.gz
- cd JointSNVMix-x.y.z
- python setup.py install
There is also config/ folder alongside the setup.py file. This folder contains example priors, and parameters files for running the JointSNVMix software. It may be useful to copy this somewhere easily accessible.