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Jakob Russel committed Sep 14, 2017
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Expand Up @@ -42,8 +42,7 @@ Overview of this tutorial

- [Installation of packages](#installation-of-packages)
- [How to compare methods](#how-to-compare-methods)
- [How to run real (unshuffled)
data](#how-to-run-real-(unshuffled)-data)
- [How to run original data](#how-to-run-original-data)
- [Implemented methods](#implemented-methods)
- [Extra features](#extra-features)

Expand Down Expand Up @@ -122,8 +121,7 @@ in one go. If you are interested in testing treatments against a common
baseline/control, you can set `out.anova = FALSE`. This will output
results from the 2. level of the `predictor` compared to the intercept.
This will ensure that p-values from `testDA` are comparable to the ones
for the final analysis (See more
[here](#how-to-run-real-(unshuffled)-data)).
for the final analysis (See more [here](#how-to-run-original-data)).

### *If you have a paired/blocked experimental design:*

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summary(mytest)

How to run real (unshuffled) data
=================================
How to run original data
========================

All tests can easily be run with the original data. E.g. edgeR exact
test:
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