481 - Improving readability and reproducibility of the repo

[mxochicale]

Description

Fixes #481: Improving readability and reproducibility, including:

• Fixed templates for issues and PR
• Adds .pre-commit-config.yaml with schemas/github-issue-forms.json to check templates
• Adds note for links that are not open to the public by essentially requesting access with a new issue
• Adds collapsed sections to improve readability of main README

Type of change

Please delete options accordingly to the description.

• New feature (non-breaking change which adds functionality)
• This change requires a documentation update

Suggested Checklist

• I have performed a self-review of my own code.
• I have made corresponding changes to the documentation.
• My changes generate no new warnings.
• I have commented my code, particularly in hard-to-understand areas.
• I have passed on my local host device. (see further details at the CONTRIBUTING document)
• Make sure your branch is up-to-date with main branch. See CONTRIBUTING for a general example to syncronise your branch with the main branch.
• I have requested PR review to UCLH-Foundtry/arc-dev
• I have addressed and marked as resolved all the review comments in my PR.
• Finally, I have selected squash and merge

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 87.32%. Comparing base (4ab7d06) to head (6514400).
Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #514   +/-   ##
=======================================
  Coverage   87.32%   87.32%           
=======================================
  Files          76       76           
  Lines        3440     3440           
=======================================
  Hits         3004     3004           
  Misses        436      436           

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[stefpiatek]

Couple of suggestions and tweaks