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@SMD-Bioinformatics-Lund

SMD Bioinformatics Lund

Bioinformatic team at Section for Molecular Diagnostics, Laboratory Services, Region Skåne, Lund

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  1. gens gens Public

    TypeScript 13 5

  2. nextflow_wgs nextflow_wgs Public

    Perl 6 5

  3. nextflow_microwgs nextflow_microwgs Public

    Perl 2 1

  4. nextflow_tumwgs nextflow_tumwgs Public

    Perl 2 2

  5. SomaticPanelPipeline SomaticPanelPipeline Public

    Nextflow 2

Repositories

Showing 10 of 59 repositories
  • gms_16S Public Forked from genomic-medicine-sweden/gms_16S

    A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.

    SMD-Bioinformatics-Lund/gms_16S’s past year of commit activity
    Nextflow 0 GPL-3.0 3 0 0 Updated Mar 16, 2025
  • nextflow_wgs Public
    SMD-Bioinformatics-Lund/nextflow_wgs’s past year of commit activity
    Perl 6 5 90 (3 issues need help) 3 Updated Mar 14, 2025
  • SomaticPanelPipeline Public
    SMD-Bioinformatics-Lund/SomaticPanelPipeline’s past year of commit activity
    Nextflow 0 2 17 (1 issue needs help) 1 Updated Mar 14, 2025
  • coyote_blueprinted Public
    SMD-Bioinformatics-Lund/coyote_blueprinted’s past year of commit activity
    Python 0 0 20 0 Updated Mar 14, 2025
  • PipeEval Public

    Evaluate changes to your pipelines.

    SMD-Bioinformatics-Lund/PipeEval’s past year of commit activity
    Python 0 Apache-2.0 0 16 0 Updated Mar 13, 2025
  • bonsai Public

    Visualize and analyze resistance and outbreak of bacterial pathogen

    SMD-Bioinformatics-Lund/bonsai’s past year of commit activity
    Standard ML 4 GPL-3.0 1 25 0 Updated Mar 12, 2025
  • sulphur Public

    Post-processing for the the gms_16S pipeline

    SMD-Bioinformatics-Lund/sulphur’s past year of commit activity
    0 0 0 1 Updated Mar 11, 2025
  • Nisse Public

    Post-processing pipeline for Tomte

    SMD-Bioinformatics-Lund/Nisse’s past year of commit activity
    Nextflow 0 0 3 2 Updated Mar 7, 2025
  • gens Public
    SMD-Bioinformatics-Lund/gens’s past year of commit activity
    TypeScript 13 MPL-2.0 5 45 2 Updated Mar 4, 2025
  • PGxModule Public

    PGxModule is an advanced Nextflow DSL2 workflow, designed to seamlessly integrate into your genomics pipeline. It empowers you to generate sample-specific reports with clinical guidelines, leveraging state-of-the-art variant detection in Genomic Medicine Sweden sequencing panels.

    SMD-Bioinformatics-Lund/PGxModule’s past year of commit activity
    Nextflow 1 GPL-3.0 0 6 (1 issue needs help) 0 Updated Mar 3, 2025
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