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Typos fixed
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Sanduni-P committed Apr 23, 2024
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9 changes: 4 additions & 5 deletions vignettes/5_Exploring_Metabric.qmd
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Expand Up @@ -30,6 +30,7 @@ The following table illustartes the column names and descriptions of the metabri
<tr><td>Age_At_Diagnosis</td> <td>Age at Diagnosis</td></tr>
<tr><td>Os_Months</td> <td>Overall survival in months since initial diagonosis.</td></tr>
<tr><td>Os_Status</td> <td>Overall patient survival status.</td></tr>
<tr><td>Claudin_Subtype</td> <td>Pam50 + Claudin-low subtype.</td></tr>
<tr><td>Threegene</td> <td>3-Gene classifier subtype</td></tr>
<tr><td>Vital_Status</td> <td>The survival state of the person.</td></tr>
<tr><td>Radio_Therapy</td> <td>Radio Therapy</td></tr>
Expand Down Expand Up @@ -236,7 +237,7 @@ dim(clinical_and_expression_data)

**4. Round all columns containing expression data to two decimal places and display only the relevant columns alongside the patient IDs. **

*Hint: see help page of `mutate_at()`.*
*Hint: see help page of `mutate_at()`. The `round()` function is useful for rounding numerical values to a specified number of decimal places.*

```{r}
Expand All @@ -263,8 +264,6 @@ dim(clinical_and_expression_data)

**2. Round both NPI computations to two decimal places and display the results in decreasing order of the newly calculated NPI column.**

The `round()` function is useful for rounding numerical values to a specified number of decimal places.

```{r}
```
Expand Down Expand Up @@ -295,15 +294,15 @@ Standardization of a set of measurements involves subtracting the mean from each
```

**3. Add another column to the modified metabric data frame containing a z-score for GATA3 and then create a scatter plot of the z-scores of GATA3 against ERBB2. Modify the plot to facet by the PAM50 classification.**
**3. Add another column to the modified metabric data frame containing a z-score for GATA3 and then create a scatter plot of the z-scores of GATA3 against ERBB2. Modify the plot to facet by the Claudin_Subtype classification.**

```{r}
```

**4. Standardize the expression values for all genes in a single operation using an anonymous function, overwriting their original values, and round the resulting values to 3 significant figures.**

*Hine: refer `mutate_at()`*
*Hint: refer `mutate_at()`*

```{r}
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