Docs1

.JuliaFormatter.toml

@@ -0,0 +1,2 @@
+style = "sciml"
+format_markdown = true

.github/workflows/CI.yml

@@ -3,10 +3,13 @@ on:
   pull_request:
     branches:
       - master
+    paths-ignore:
+      - 'docs/**'
   push:
     branches:
       - master
-    tags: '*'
+    paths-ignore:
+      - 'docs/**'
 jobs:
   test:
     name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}

.github/workflows/CompatHelper.yml

@@ -21,4 +21,4 @@ jobs:
       - name: CompatHelper.main()
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        run: julia -e 'using CompatHelper; CompatHelper.main()'
+        run: julia -e 'using CompatHelper; CompatHelper.main(;subdirs=["", "docs"])'

.github/workflows/Documentation.yml

@@ -21,3 +21,9 @@ jobs:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # For authentication with GitHub Actions token
           DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} # For authentication with SSH deploy key
         run: julia --project=docs/ docs/make.jl
+      - uses: julia-actions/julia-processcoverage@v1
+        with:
+          directories: src
+      - uses: codecov/codecov-action@v3
+        with:
+          files: lcov.info

.github/workflows/FormatCheck.yml

@@ -0,0 +1,42 @@
+name: format-check
+
+on:
+  push:
+    branches:
+      - 'master'
+      - 'release-'
+    tags: '*'
+  pull_request:
+
+jobs:
+  build:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        julia-version: [1]
+        julia-arch: [x86]
+        os: [ubuntu-latest]
+    steps:
+      - uses: julia-actions/setup-julia@latest
+        with:
+          version: ${{ matrix.julia-version }}
+
+      - uses: actions/checkout@v4
+      - name: Install JuliaFormatter and format
+        # This will use the latest version by default but you can set the version like so:
+        #
+        # julia  -e 'using Pkg; Pkg.add(PackageSpec(name="JuliaFormatter", version="0.13.0"))'
+        run: |
+          julia  -e 'using Pkg; Pkg.add(PackageSpec(name="JuliaFormatter"))'
+          julia  -e 'using JuliaFormatter; format(".", verbose=true)'
+      - name: Format check
+        run: |
+          julia -e '
+          out = Cmd(`git diff --name-only`) |> read |> String
+          if out == ""
+              exit(0)
+          else
+              @error "Some files have not been formatted !!!"
+              write(stdout, out)
+              exit(1)
+          end'

.github/workflows/Invalidations.yml

@@ -0,0 +1,40 @@
+name: Invalidations
+
+on:
+  pull_request:
+
+concurrency:
+  # Skip intermediate builds: always.
+  # Cancel intermediate builds: always.
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  evaluate:
+    # Only run on PRs to the default branch.
+    # In the PR trigger above branches can be specified only explicitly whereas this check should work for master, main, or any other default branch
+    if: github.base_ref == github.event.repository.default_branch
+    runs-on: ubuntu-latest
+    steps:
+    - uses: julia-actions/setup-julia@v1
+      with:
+        version: '1'
+    - uses: actions/checkout@v4
+    - uses: julia-actions/julia-buildpkg@v1
+    - uses: julia-actions/julia-invalidations@v1
+      id: invs_pr
+
+    - uses: actions/checkout@v4
+      with:
+        ref: ${{ github.event.repository.default_branch }}
+    - uses: julia-actions/julia-buildpkg@v1
+    - uses: julia-actions/julia-invalidations@v1
+      id: invs_default
+
+    - name: Report invalidation counts
+      run: |
+        echo "Invalidations on default branch: ${{ steps.invs_default.outputs.total }} (${{ steps.invs_default.outputs.deps }} via deps)" >> $GITHUB_STEP_SUMMARY
+        echo "This branch: ${{ steps.invs_pr.outputs.total }} (${{ steps.invs_pr.outputs.deps }} via deps)" >> $GITHUB_STEP_SUMMARY
+    - name: Check if the PR does increase number of invalidations
+      if: steps.invs_pr.outputs.total > steps.invs_default.outputs.total
+      run: exit 1

LICENSE.md

@@ -1,40 +1,33 @@
 The DataInterpolations.jl package is licensed under the MIT "Expat" License:
 
 > Copyright (c) 2018: University of Maryland, Center for Translational Medicine.
->
->
+> 
 > Permission is hereby granted, free of charge, to any person obtaining a copy
->
+> 
 > of this software and associated documentation files (the "Software"), to deal
->
+> 
 > in the Software without restriction, including without limitation the rights
->
+> 
 > to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
->
+> 
 > copies of the Software, and to permit persons to whom the Software is
->
+> 
 > furnished to do so, subject to the following conditions:
->
->
->
+> 
 > The above copyright notice and this permission notice shall be included in all
->
+> 
 > copies or substantial portions of the Software.
->
->
->
+> 
 > THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
->
+> 
 > IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
->
+> 
 > FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
->
+> 
 > AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
->
+> 
 > LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
->
+> 
 > OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
->
+> 
 > SOFTWARE.
->
->

README.md

@@ -6,10 +6,9 @@
 [![codecov](https://codecov.io/gh/SciML/DataInterpolations.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/SciML/DataInterpolations.jl)
 [![CI](https://github.com/SciML/DataInterpolations.jl/actions/workflows/CI.yml/badge.svg?branch=master)](https://github.com/SciML/DataInterpolations.jl/actions/workflows/CI.yml)
 
-[![ColPrac: Contributor's Guide on Collaborative Practices for Community Packages](https://img.shields.io/badge/ColPrac-Contributor's%20Guide-blueviolet)](https://github.com/SciML/ColPrac)
+[![ColPrac: Contributor's Guide on Collaborative Practices for Community Packages](https://img.shields.io/badge/ColPrac-Contributor%27s%20Guide-blueviolet)](https://github.com/SciML/ColPrac)
 [![SciML Code Style](https://img.shields.io/static/v1?label=code%20style&message=SciML&color=9558b2&labelColor=389826)](https://github.com/SciML/SciMLStyle)
 
-
 DataInterpolations.jl is a library for performing interpolations of one-dimensional data. By
 "data interpolations" we mean techniques for interpolating possibly noisy data, and thus
 some methods are mixtures of regressions with interpolations (i.e. do not hit the data
@@ -23,7 +22,7 @@ All interpolation objects act as functions. Thus for example, using an interpola
 ```julia
 u = rand(5)
 t = 0:4
-interp = LinearInterpolation(u,t)
+interp = LinearInterpolation(u, t)
 interp(3.5) # Gives the linear interpolation value at t=3.5
 ```
 
@@ -52,45 +51,40 @@ interp[4] # Gives the 4th value of u
 In all cases, `u` an `AbstractVector` of values and `t` is an `AbstractVector` of timepoints
 corresponding to `(u,t)` pairs.
 
-- `ConstantInterpolation(u,t)` - A piecewise constant interpolation.
-
-- `LinearInterpolation(u,t)` - A linear interpolation.
-
-- `QuadraticInterpolation(u,t)` - A quadratic interpolation.
-
-- `LagrangeInterpolation(u,t,n)` - A Lagrange interpolation of order `n`.
-
-- `QuadraticSpline(u,t)` - A quadratic spline interpolation.
-
-- `CubicSpline(u,t)` - A cubic spline interpolation.
-
-- `AkimaInterpolation(u, t)` - Akima spline interpolation provides a smoothing effect and is computationally efficient.
-
-- `BSplineInterpolation(u,t,d,pVec,knotVec)` - An interpolation B-spline. This is a B-spline which hits each of the data points. The argument choices are:
-  	- `d` - degree of B-spline  
-  	- `pVec` - Symbol to Parameters Vector, `pVec = :Uniform` for uniform spaced parameters and `pVec = :ArcLen` for parameters generated by chord length method.  
-  	- `knotVec` - Symbol to Knot Vector, `knotVec = :Uniform` for uniform knot vector, `knotVec = :Average` for average spaced knot vector.
-
-- `BSplineApprox(u,t,d,h,pVec,knotVec)` - A regression B-spline which smooths the fitting curve. The argument choices are the same as the `BSplineInterpolation`, with the additional parameter `h<length(t)` which is the number of control points to use, with smaller `h` indicating more smoothing.
+  - `ConstantInterpolation(u,t)` - A piecewise constant interpolation.
+
+  - `LinearInterpolation(u,t)` - A linear interpolation.
+  - `QuadraticInterpolation(u,t)` - A quadratic interpolation.
+  - `LagrangeInterpolation(u,t,n)` - A Lagrange interpolation of order `n`.
+  - `QuadraticSpline(u,t)` - A quadratic spline interpolation.
+  - `CubicSpline(u,t)` - A cubic spline interpolation.
+  - `AkimaInterpolation(u, t)` - Akima spline interpolation provides a smoothing effect and is computationally efficient.
+  - `BSplineInterpolation(u,t,d,pVec,knotVec)` - An interpolation B-spline. This is a B-spline which hits each of the data points. The argument choices are:
+
+      + `d` - degree of B-spline
+      + `pVec` - Symbol to Parameters Vector, `pVec = :Uniform` for uniform spaced parameters and `pVec = :ArcLen` for parameters generated by chord length method.
+      + `knotVec` - Symbol to Knot Vector, `knotVec = :Uniform` for uniform knot vector, `knotVec = :Average` for average spaced knot vector.
+  - `BSplineApprox(u,t,d,h,pVec,knotVec)` - A regression B-spline which smooths the fitting curve. The argument choices are the same as the `BSplineInterpolation`, with the additional parameter `h<length(t)` which is the number of control points to use, with smaller `h` indicating more smoothing.
 
 ## Extension Methods
 
 The follow methods require extra dependencies and will be loaded as package extensions.
 
-- `Curvefit(u,t,m,p,alg)` - An interpolation which is done by fitting a user-given functional form `m(t,p)` where `p` is the vector of parameters. The user's input `p` is a an initial value for a least-square fitting, `alg` is the algorithm choice to use for optimize the cost function (sum of squared deviations) via `Optim.jl` and optimal `p`s are used in the interpolation. Requires `using RegularizationTools`
+  - `Curvefit(u,t,m,p,alg)` - An interpolation which is done by fitting a user-given functional form `m(t,p)` where `p` is the vector of parameters. The user's input `p` is a an initial value for a least-square fitting, `alg` is the algorithm choice to use for optimize the cost function (sum of squared deviations) via `Optim.jl` and optimal `p`s are used in the interpolation. Requires `using RegularizationTools`
 
 ## Plotting
 
-DataInterpolations.jl is tied into the Plots.jl ecosystem, by way of RecipesBase.  
+DataInterpolations.jl is tied into the Plots.jl ecosystem, by way of RecipesBase.
 Any interpolation can be plotted using the `plot` command (or any other), since they have type recipes associated with them.
 
 For convenience, and to allow keyword arguments to propagate properly, DataInterpolations.jl also defines several series types, corresponding to different interpolations.
 
 The series types defined are:
-- `:linear_interp`
-- `:quadratic_interp`
-- `:lagrange_interp`
-- `:quadratic_spline`
-- `:cubic_spline`
+
+  - `:linear_interp`
+  - `:quadratic_interp`
+  - `:lagrange_interp`
+  - `:quadratic_spline`
+  - `:cubic_spline`
 
 By and large, these accept the same keywords as their function counterparts.

docs/Project.toml

@@ -5,3 +5,11 @@ Optim = "429524aa-4258-5aef-a3af-852621145aeb"
 Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 RegularizationTools = "29dad682-9a27-4bc3-9c72-016788665182"
 StableRNGs = "860ef19b-820b-49d6-a774-d7a799459cd3"
+
+[compat]
+DataInterpolations = "4"
+Documenter = "1"
+Optim = "1"
+Plots = "1"
+RegularizationTools = "0.6"
+StableRNGs = "1"

docs/make.jl

@@ -2,20 +2,14 @@ using Documenter, DataInterpolations
 
 ENV["GKSwstype"] = "100"
 
-makedocs(
-    modules = [DataInterpolations],
+makedocs(modules = [DataInterpolations],
     sitename = "DataInterpolations.jl",
+    clean = true,
+    doctest = false,
+    linkcheck = true,
     warnonly = [:missing_docs],
-    format = Documenter.HTML(
-        analytics = "UA-90474609-3",
-        assets = ["assets/favicon.ico"],
-        canonical = "https://docs.sciml.ai/DataInterpolations/stable/",
-    ),
-    pages = [
-        "index.md",
-        "Methods" => "methods.md",
-        "Interface" => "interface.md"
-    ],
-)
+    format = Documenter.HTML(assets = ["assets/favicon.ico"],
+        canonical = "https://docs.sciml.ai/DataInterpolations/stable/"),
+    pages = ["index.md", "Methods" => "methods.md", "Interface" => "interface.md"])
 
 deploydocs(repo = "github.com/SciML/DataInterpolations.jl"; push_preview = true)