build based on cb781b9

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.9.3","generation_timestamp":"2023-11-06T01:37:41","documenter_version":"1.1.2"}}
+{"documenter":{"julia_version":"1.9.3","generation_timestamp":"2023-11-07T15:12:32","documenter_version":"1.1.2"}}

dev/assets/Manifest.toml

@@ -294,9 +294,9 @@ version = "0.3.12"
 
 [[deps.ChainRules]]
 deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
-git-tree-sha1 = "7e4f5593e7e1ab923cebc5414f6d5433872cdd19"
+git-tree-sha1 = "710940598100496ad6cbb707e481c28186354197"
 uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
-version = "1.56.0"
+version = "1.57.0"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra"]
@@ -516,10 +516,10 @@ uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 version = "1.6.1"
 
 [[deps.DataInterpolations]]
-deps = ["LinearAlgebra", "RecipesBase", "RecursiveArrayTools", "Reexport", "Requires"]
-git-tree-sha1 = "5d8ddbe1e7e539d3c2f6ae34d32a770e722eec07"
+deps = ["LinearAlgebra", "PrettyTables", "RecipesBase", "RecursiveArrayTools", "Reexport", "Requires"]
+git-tree-sha1 = "97b5c6115165fc9f99908cbdd2ea4c0efda0843e"
 uuid = "82cc6244-b520-54b8-b5a6-8a565e85f1d0"
-version = "4.4.0"
+version = "4.5.0"
 
     [deps.DataInterpolations.extensions]
     DataInterpolationsChainRulesCoreExt = "ChainRulesCore"
@@ -1295,9 +1295,9 @@ version = "0.4.1"
 
 [[deps.KernelAbstractions]]
 deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "a25bf8ec9f118ce4701da6058e351730e4af6b5a"
+git-tree-sha1 = "95063c5bc98ba0c47e75e05ae71f1fed4deac6f6"
 uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
-version = "0.9.11"
+version = "0.9.12"
 weakdeps = ["EnzymeCore"]
 
     [deps.KernelAbstractions.extensions]
@@ -1746,9 +1746,9 @@ version = "0.1.2"
 
 [[deps.MathOptInterface]]
 deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
-git-tree-sha1 = "13b3d40084d04e609e0509730f05215fb2a2fba4"
+git-tree-sha1 = "70ea2892b8bfffecc0387ba1a6a21192814f120c"
 uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
-version = "1.21.0"
+version = "1.22.0"
 
 [[deps.MathProgBase]]
 deps = ["LinearAlgebra", "SparseArrays"]
@@ -1964,9 +1964,9 @@ uuid = "d8793406-e978-5875-9003-1fc021f44a92"
 version = "0.4.1"
 
 [[deps.Observables]]
-git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93"
+git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225"
 uuid = "510215fc-4207-5dde-b226-833fc4488ee2"
-version = "0.5.4"
+version = "0.5.5"
 
 [[deps.OffsetArrays]]
 deps = ["Adapt"]
@@ -2063,9 +2063,9 @@ version = "0.1.8"
 
 [[deps.OptimizationOptimJL]]
 deps = ["Optim", "Optimization", "Reexport", "SparseArrays"]
-git-tree-sha1 = "d8a989697ad1037258238004306057ca866bc337"
+git-tree-sha1 = "fedb7064e737aefef3382f8bef3a4e464c7cb8eb"
 uuid = "36348300-93cb-4f02-beb5-3c3902f8871e"
-version = "0.1.12"
+version = "0.1.13"
 
 [[deps.OptimizationOptimisers]]
 deps = ["Optimisers", "Optimization", "Printf", "ProgressLogging", "Reexport"]
@@ -2193,9 +2193,9 @@ version = "0.4.4"
 
 [[deps.Polyester]]
 deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"]
-git-tree-sha1 = "398f91235beaac50445557c937ecb0145d171842"
+git-tree-sha1 = "fca25670784a1ae44546bcb17288218310af2778"
 uuid = "f517fe37-dbe3-4b94-8317-1923a5111588"
-version = "0.7.8"
+version = "0.7.9"
 
 [[deps.PolyesterWeave]]
 deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"]
@@ -2276,9 +2276,9 @@ version = "1.9.0"
 
 [[deps.Qt6Base_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"]
-git-tree-sha1 = "1dab79940e0a8098f59a5fa961234a58f43444e8"
+git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b"
 uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56"
-version = "6.5.3+0"
+version = "6.5.3+1"
 
 [[deps.QuadGK]]
 deps = ["DataStructures", "LinearAlgebra"]
@@ -2468,9 +2468,9 @@ version = "0.1.9"
 
 [[deps.SciMLOperators]]
 deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"]
-git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b"
+git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d"
 uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961"
-version = "0.3.6"
+version = "0.3.7"
 
 [[deps.SciMLSensitivity]]
 deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SparseDiffTools", "StaticArraysCore", "Statistics", "StochasticDiffEq", "Tracker", "TruncatedStacktraces", "Zygote", "ZygoteRules"]
@@ -2578,9 +2578,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
 [[deps.SparseDiffTools]]
 deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"]
-git-tree-sha1 = "ede72cbdcd06b991ec29c205482dc19867b5eb99"
+git-tree-sha1 = "e162b74fd1ce6d371ff5c584b53e34538edb9212"
 uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
-version = "2.10.0"
+version = "2.11.0"
 weakdeps = ["Enzyme", "Symbolics", "Zygote"]
 
     [deps.SparseDiffTools.extensions]

dev/getting_started/find_root/index.html

@@ -69,4 +69,4 @@
  0.0
  0.0
  0.0</code></pre><h3 id="Step-5:-Analyze-the-Solution"><a class="docs-heading-anchor" href="#Step-5:-Analyze-the-Solution">Step 5: Analyze the Solution</a><a id="Step-5:-Analyze-the-Solution-1"></a><a class="docs-heading-anchor-permalink" href="#Step-5:-Analyze-the-Solution" title="Permalink"></a></h3><p>Now let&#39;s check out the solution. First of all, what kind of thing is the <code>sol</code>? We can see that by asking for its type:</p><pre><code class="language-julia hljs">typeof(sol)</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">SciMLBase.NonlinearSolution{Float64, 1, Vector{Float64}, Vector{Float64}, SciMLBase.NonlinearProblem{Vector{Float64}, true, Vector{Float64}, SciMLBase.NonlinearFunction{true, SciMLBase.FullSpecialize, ModelingToolkit.var&quot;#f#733&quot;{RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:ˍ₋arg1, :ˍ₋arg2), ModelingToolkit.var&quot;#_RGF_ModTag&quot;, ModelingToolkit.var&quot;#_RGF_ModTag&quot;, (0x892348f8, 0xa22abdbe, 0xa285f9d8, 0x95831967, 0xeaff7cf7), Nothing}, RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:ˍ₋out, :ˍ₋arg1, :ˍ₋arg2), ModelingToolkit.var&quot;#_RGF_ModTag&quot;, ModelingToolkit.var&quot;#_RGF_ModTag&quot;, (0x2a5931a9, 0x19d9b662, 0x2773c77d, 0x8f1eafb9, 0xd485c91b), Nothing}}, LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Vector{Symbol}, Vector{Symbol}, ModelingToolkit.var&quot;#generated_observed#736&quot;{ModelingToolkit.NonlinearSystem, Dict{Any, Any}}, Nothing, ModelingToolkit.NonlinearSystem, Nothing}, Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}}, SciMLBase.StandardNonlinearProblem}, NonlinearSolve.NewtonRaphson{0, true, Val{:forward}, Nothing, typeof(NonlinearSolve.DEFAULT_PRECS), true, nothing}, Nothing, Nothing, SciMLBase.NLStats}</code></pre><p>From this, we can see that it is an <code>NonlinearSolution</code>. We can see the documentation for how to use the <code>NonlinearSolution</code> by checking the <a href="https://docs.sciml.ai/NonlinearSolve/stable/basics/NonlinearSolution/">NonlinearSolve.jl solution type page.</a> For example, the solution is stored as <code>.u</code>. What is the solution to our nonlinear system, and what is the final residual value? We can check it as follows:</p><pre><code class="language-julia hljs"># Analyze the solution
-@show sol.u, sol.resid</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">([0.0, 0.0, 0.0], [0.0, 0.0, 0.0])</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../fit_simulation/">« Fit a simulation to a dataset</a><a class="docs-footer-nextpage" href="../../comparisons/python/">Getting Started with Julia&#39;s SciML for the Python User »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Monday 6 November 2023 01:37">Monday 6 November 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+@show sol.u, sol.resid</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">([0.0, 0.0, 0.0], [0.0, 0.0, 0.0])</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../fit_simulation/">« Fit a simulation to a dataset</a><a class="docs-footer-nextpage" href="../../comparisons/python/">Getting Started with Julia&#39;s SciML for the Python User »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Tuesday 7 November 2023 15:12">Tuesday 7 November 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>